Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33292 | 5' | -61.5 | NC_007605.1 | + | 96739 | 0.67 | 0.617001 |
Target: 5'- ---gGGUCUCCaCCGcGcaggCCCCCUCCa -3' miRNA: 3'- aucaCCAGGGGaGGC-Cua--GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 24188 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 27257 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 30326 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 33395 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 142685 | 0.69 | 0.546439 |
Target: 5'- gGGUGG-CCCa-CCGGGuccgcuggguccgcUCCCCgCUCCg -3' miRNA: 3'- aUCACCaGGGgaGGCCU--------------AGGGG-GAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 51330 | 0.68 | 0.557901 |
Target: 5'- gUAGUGcUCCCCUuuuccccCUGGuccGUCuCCCCUCCu -3' miRNA: 3'- -AUCACcAGGGGA-------GGCC---UAG-GGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 65458 | 0.68 | 0.558859 |
Target: 5'- gUGGUGGcCUgCUCCauucuucagGGAUCCCCCacuuaugauUCCa -3' miRNA: 3'- -AUCACCaGGgGAGG---------CCUAGGGGG---------AGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 35288 | 0.68 | 0.607248 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCUc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 21119 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 18050 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 14981 | 0.7 | 0.493173 |
Target: 5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3' miRNA: 3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 19944 | 0.71 | 0.422782 |
Target: 5'- cAGgGGUCCCCga-GGGUaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA--------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 13806 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 16875 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 23012 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 26081 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 29150 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 32219 | 0.71 | 0.431255 |
Target: 5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3' miRNA: 3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5' |
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33292 | 5' | -61.5 | NC_007605.1 | + | 39815 | 0.7 | 0.457252 |
Target: 5'- -cGUGGUCCCCUggaccccagccCCGccGAUCCCuCCcCCa -3' miRNA: 3'- auCACCAGGGGA-----------GGC--CUAGGG-GGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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