miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 5' -61.5 NC_007605.1 + 12029 0.66 0.694817
Target:  5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3'
miRNA:   3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5'
33292 5' -61.5 NC_007605.1 + 12090 0.66 0.713945
Target:  5'- ------cCCCCUCCccGUCCCCCUUCg -3'
miRNA:   3'- aucaccaGGGGAGGccUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 12603 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 13193 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 13806 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 14981 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 15098 0.66 0.694817
Target:  5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3'
miRNA:   3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5'
33292 5' -61.5 NC_007605.1 + 15159 0.66 0.713945
Target:  5'- ------cCCCCUCCccGUCCCCCUUCg -3'
miRNA:   3'- aucaccaGGGGAGGccUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 15672 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 16262 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 16875 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 18050 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 18167 0.66 0.694817
Target:  5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3'
miRNA:   3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5'
33292 5' -61.5 NC_007605.1 + 18228 0.66 0.713945
Target:  5'- ------cCCCCUCCccGUCCCCCUUCg -3'
miRNA:   3'- aucaccaGGGGAGGccUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 18741 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 19331 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 19944 0.71 0.422782
Target:  5'- cAGgGGUCCCCga-GGGUaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA--------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 21119 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 21236 0.66 0.694817
Target:  5'- ---gGGUCCCC-CUGGA-CCCCggCCu -3'
miRNA:   3'- aucaCCAGGGGaGGCCUaGGGGgaGG- -5'
33292 5' -61.5 NC_007605.1 + 21297 0.66 0.713945
Target:  5'- ------cCCCCUCCccGUCCCCCUUCg -3'
miRNA:   3'- aucaccaGGGGAGGccUAGGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.