miRNA display CGI


Results 1 - 20 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33293 5' -61.9 NC_007605.1 + 154138 0.66 0.718688
Target:  5'- ----aGGCCCUgagccCCGCCaaccugcaggcccugGCCC-CCUCCc -3'
miRNA:   3'- cuaagCCGGGA-----GGCGG---------------UGGGcGGAGG- -5'
33293 5' -61.9 NC_007605.1 + 150666 0.66 0.714909
Target:  5'- --cUCGGCCCUgU-CCACCUGUaugUCCa -3'
miRNA:   3'- cuaAGCCGGGAgGcGGUGGGCGg--AGG- -5'
33293 5' -61.9 NC_007605.1 + 61505 0.66 0.714909
Target:  5'- --cUCGGCC-UCCGCCcgcagguaGgCCGCCcgggCCa -3'
miRNA:   3'- cuaAGCCGGgAGGCGG--------UgGGCGGa---GG- -5'
33293 5' -61.9 NC_007605.1 + 87759 0.66 0.714909
Target:  5'- --gUgGGgCCUCCuGCCGCgggGCCUCCu -3'
miRNA:   3'- cuaAgCCgGGAGG-CGGUGgg-CGGAGG- -5'
33293 5' -61.9 NC_007605.1 + 136977 0.66 0.714909
Target:  5'- aGAgggUGGCguCCUCCcccgggaauaGCCcCCCGCCUUCu -3'
miRNA:   3'- -CUaa-GCCG--GGAGG----------CGGuGGGCGGAGG- -5'
33293 5' -61.9 NC_007605.1 + 96747 0.66 0.714909
Target:  5'- ---cCGGCCUccaCUGCCuccucgACCCcgGCCUCCa -3'
miRNA:   3'- cuaaGCCGGGa--GGCGG------UGGG--CGGAGG- -5'
33293 5' -61.9 NC_007605.1 + 136435 0.66 0.712068
Target:  5'- ---gCGGCCCcgcugccccccuuuUCCcaccaggcaauaGCCACCgCGCCUUCc -3'
miRNA:   3'- cuaaGCCGGG--------------AGG------------CGGUGG-GCGGAGG- -5'
33293 5' -61.9 NC_007605.1 + 142687 0.66 0.709222
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUcCCCG-CUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGuGGGCgGAGG- -5'
33293 5' -61.9 NC_007605.1 + 87454 0.66 0.705418
Target:  5'- ---aCGGgCCUCUGCUgaaCCGgCUCCa -3'
miRNA:   3'- cuaaGCCgGGAGGCGGug-GGCgGAGG- -5'
33293 5' -61.9 NC_007605.1 + 107232 0.66 0.705418
Target:  5'- -uUUCGGgCCUUgauuagCGCCACCuCGCCg-- -3'
miRNA:   3'- cuAAGCCgGGAG------GCGGUGG-GCGGagg -5'
33293 5' -61.9 NC_007605.1 + 116556 0.66 0.695871
Target:  5'- gGAUUgGGCUCaUCCG-UGCCCcCCUCCc -3'
miRNA:   3'- -CUAAgCCGGG-AGGCgGUGGGcGGAGG- -5'
33293 5' -61.9 NC_007605.1 + 101853 0.66 0.695871
Target:  5'- --cUCGGCuCCUCgGCCAuuccuguucaccCCaCGCCggCCu -3'
miRNA:   3'- cuaAGCCG-GGAGgCGGU------------GG-GCGGa-GG- -5'
33293 5' -61.9 NC_007605.1 + 45180 0.66 0.695871
Target:  5'- ----gGGCCCUgCgaaugGUCGCCaGCCUCCg -3'
miRNA:   3'- cuaagCCGGGAgG-----CGGUGGgCGGAGG- -5'
33293 5' -61.9 NC_007605.1 + 71835 0.66 0.686275
Target:  5'- ---aCGGCCC-CgGCCACUgGCCg-- -3'
miRNA:   3'- cuaaGCCGGGaGgCGGUGGgCGGagg -5'
33293 5' -61.9 NC_007605.1 + 56428 0.66 0.686275
Target:  5'- ----gGGCCCcucCCGCCGCCUcaguGCCcCCc -3'
miRNA:   3'- cuaagCCGGGa--GGCGGUGGG----CGGaGG- -5'
33293 5' -61.9 NC_007605.1 + 62942 0.66 0.686275
Target:  5'- ----gGGacgaCC-CCGCUGCCCGCCUgCg -3'
miRNA:   3'- cuaagCCg---GGaGGCGGUGGGCGGAgG- -5'
33293 5' -61.9 NC_007605.1 + 142585 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142381 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142483 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5'
33293 5' -61.9 NC_007605.1 + 142177 0.66 0.680498
Target:  5'- ---gUGGCCCaccggguccgcugggUCCGCUGCCC-CgCUCCg -3'
miRNA:   3'- cuaaGCCGGG---------------AGGCGGUGGGcG-GAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.