miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 169982 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 12629 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 15698 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 38984 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 125462 0.66 0.730221
Target:  5'- aCCGGG--UGGCaGCUCCUggcaGUCAUUCa -3'
miRNA:   3'- gGGCCCuaACCGgCGGGGG----UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 39233 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 40006 0.66 0.767228
Target:  5'- gCUGGGGUccaggGGaccaCGCCCCCAcccugCAUUCc -3'
miRNA:   3'- gGGCCCUAa----CCg---GCGGGGGUa----GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 38484 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 164820 0.66 0.779789
Target:  5'- aCCCGGGAUgagaaagaccugccuUuGCCaGCCCUgGUC-CUCu -3'
miRNA:   3'- -GGGCCCUA---------------AcCGG-CGGGGgUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 38859 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 31043 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 27974 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 24905 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 38609 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 51431 0.66 0.73961
Target:  5'- gCCCaGGGAcUGGCUGUCUCCuaccUC-CUCc -3'
miRNA:   3'- -GGG-CCCUaACCGGCGGGGGu---AGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 39858 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 125706 0.67 0.697763
Target:  5'- cUCCGGGAgaucaggacgagGGCCGCCaCCAaccUCACcCa -3'
miRNA:   3'- -GGGCCCUaa----------CCGGCGGgGGU---AGUGaG- -5'
33294 3' -60.5 NC_007605.1 + 148750 0.67 0.691965
Target:  5'- cCCUGGuGAgcccuuGCCGCUCCCcgCAUUCc -3'
miRNA:   3'- -GGGCC-CUaac---CGGCGGGGGuaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 116169 0.67 0.682266
Target:  5'- gCCGGGAUgugaGGCCucagcGCCCCC-UC-CUg -3'
miRNA:   3'- gGGCCCUAa---CCGG-----CGGGGGuAGuGAg -5'
33294 3' -60.5 NC_007605.1 + 160011 0.67 0.679349
Target:  5'- gCCCGGGAccgcgcccuccucugGGCCGCCCggCC-UCGCc- -3'
miRNA:   3'- -GGGCCCUaa-------------CCGGCGGG--GGuAGUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.