miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 31043 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 32226 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 91936 0.66 0.767228
Target:  5'- cCUCGGuguGAgaGGCa-CCCCCAUCAUUCc -3'
miRNA:   3'- -GGGCC---CUaaCCGgcGGGGGUAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 36334 0.66 0.776223
Target:  5'- uUgGGGAaaacacggGGgUGCCCCCAcCACUCc -3'
miRNA:   3'- gGgCCCUaa------CCgGCGGGGGUaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 23019 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 26088 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 29157 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 125462 0.66 0.730221
Target:  5'- aCCGGG--UGGCaGCUCCUggcaGUCAUUCa -3'
miRNA:   3'- gGGCCCuaACCGgCGGGGG----UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 21836 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 16882 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 13813 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 151279 0.66 0.743342
Target:  5'- gCCCaGGGGggcaaauugcgugucUggGGCCGCCugagCCCAUC-CUCg -3'
miRNA:   3'- -GGG-CCCU---------------Aa-CCGGCGG----GGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 18767 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 164820 0.66 0.779789
Target:  5'- aCCCGGGAUgagaaagaccugccuUuGCCaGCCCUgGUC-CUCu -3'
miRNA:   3'- -GGGCCCUA---------------AcCGG-CGGGGgUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 24905 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 59134 0.66 0.748913
Target:  5'- uCCUGGcc--GGCCGCCCCCugacCUCc -3'
miRNA:   3'- -GGGCCcuaaCCGGCGGGGGuaguGAG- -5'
33294 3' -60.5 NC_007605.1 + 171580 0.66 0.752608
Target:  5'- gCCGGGGgcGcGaccgccucucuguccCCGCCCCCuGUCAUUCu -3'
miRNA:   3'- gGGCCCUaaC-C---------------GGCGGGGG-UAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 15698 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 12629 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 51431 0.66 0.73961
Target:  5'- gCCCaGGGAcUGGCUGUCUCCuaccUC-CUCc -3'
miRNA:   3'- -GGG-CCCUaACCGGCGGGGGu---AGuGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.