miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 14970 0.69 0.555377
Target:  5'- uCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 18039 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 21108 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 24177 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 27246 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 30315 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 33384 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 41241 0.69 0.555377
Target:  5'- cUuuGGGAUgcaucacuuUGaGCCacuaaGCCCCCGUUGCUCg -3'
miRNA:   3'- -GggCCCUA---------AC-CGG-----CGGGGGUAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 144057 0.69 0.555377
Target:  5'- cUuuGGGAUgcaucacuuUGaGCCacuaaGCCCCCGUUGCUCg -3'
miRNA:   3'- -GggCCCUA---------AC-CGG-----CGGGGGUAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 162795 0.71 0.471397
Target:  5'- -aUGGGAcuggcGGCCGCCCCCGcCACg- -3'
miRNA:   3'- ggGCCCUaa---CCGGCGGGGGUaGUGag -5'
33294 3' -60.5 NC_007605.1 + 153242 0.72 0.422499
Target:  5'- gCCGGGuccucGGCCaucuccgucuuucucGCCCCCuUCACUCc -3'
miRNA:   3'- gGGCCCuaa--CCGG---------------CGGGGGuAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 58327 0.73 0.378352
Target:  5'- aCCGGGcgUccccGCCGCcuCCCCAUCACUg -3'
miRNA:   3'- gGGCCCuaAc---CGGCG--GGGGUAGUGAg -5'
33294 3' -60.5 NC_007605.1 + 12788 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 15857 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 18926 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 21994 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 25063 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 28132 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 31201 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 34270 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.