miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 2886 0.67 0.720754
Target:  5'- gCCGGGcc--GCCGCCCUggCAUCuGCUCc -3'
miRNA:   3'- gGGCCCuaacCGGCGGGG--GUAG-UGAG- -5'
33294 3' -60.5 NC_007605.1 + 3370 0.72 0.410757
Target:  5'- uCCCGuGGcccUGGCCGgCCCCAUUuCUCc -3'
miRNA:   3'- -GGGC-CCua-ACCGGCgGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 12629 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 12788 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 13813 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 14970 0.69 0.555377
Target:  5'- uCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 15698 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 15857 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 16882 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 18039 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 18767 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 18926 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 19951 0.68 0.643169
Target:  5'- cCCCGaGGGUaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAaCCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 21108 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 21836 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 21994 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 23019 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 24177 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 24905 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 25063 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.