miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 51381 1.1 0.001114
Target:  5'- cCCCGGGAUUGGCCGCCCCCAUCACUCu -3'
miRNA:   3'- -GGGCCCUAACCGGCGGGGGUAGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 104264 0.78 0.19692
Target:  5'- gCCCGGGggUGGCaGCCCCC-UC-CUCc -3'
miRNA:   3'- -GGGCCCuaACCGgCGGGGGuAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 162399 0.78 0.198807
Target:  5'- cCCCGGGcUUGGCCagaGCCCCCcagaguggcuaaaggGUCACUa -3'
miRNA:   3'- -GGGCCCuAACCGG---CGGGGG---------------UAGUGAg -5'
33294 3' -60.5 NC_007605.1 + 50734 0.75 0.272835
Target:  5'- cCCUGGGGUccggcuUGGCCGCCCCgGcgCACa- -3'
miRNA:   3'- -GGGCCCUA------ACCGGCGGGGgUa-GUGag -5'
33294 3' -60.5 NC_007605.1 + 59140 0.75 0.278443
Target:  5'- cCCCGGGugcgcUGGCUuuGCCCCCAgucgccgUUACUCa -3'
miRNA:   3'- -GGGCCCua---ACCGG--CGGGGGU-------AGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141953 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142157 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 141852 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 143176 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 143278 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142055 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142871 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142972 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 143074 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142769 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142259 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142565 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142361 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142463 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5'
33294 3' -60.5 NC_007605.1 + 142667 0.75 0.291886
Target:  5'- aCCCGGuGGgccacccGGCCGCCCCCcgaGCUCc -3'
miRNA:   3'- -GGGCC-CUaa-----CCGGCGGGGGuagUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.