miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33294 3' -60.5 NC_007605.1 + 26088 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 27246 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 27974 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 28132 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 29157 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 30315 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 31043 0.66 0.748913
Target:  5'- aCCCGGGcucGGCCaGCCCagccgaCCGgcccCACUCc -3'
miRNA:   3'- -GGGCCCuaaCCGG-CGGG------GGUa---GUGAG- -5'
33294 3' -60.5 NC_007605.1 + 31201 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 32226 0.66 0.767228
Target:  5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3'
miRNA:   3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5'
33294 3' -60.5 NC_007605.1 + 33384 0.7 0.536252
Target:  5'- cCCCGGGcuucaGGCCcccuccGUCCCCGUC-CUCc -3'
miRNA:   3'- -GGGCCCuaa--CCGG------CGGGGGUAGuGAG- -5'
33294 3' -60.5 NC_007605.1 + 34270 0.74 0.333067
Target:  5'- gCCGGGGUUGGUucUGCCCCUcucUCugUCc -3'
miRNA:   3'- gGGCCCUAACCG--GCGGGGGu--AGugAG- -5'
33294 3' -60.5 NC_007605.1 + 35295 0.69 0.594164
Target:  5'- cCCCGaGGGUgaGGCCcaGCCCCCucUCGCcCa -3'
miRNA:   3'- -GGGC-CCUAa-CCGG--CGGGGGu-AGUGaG- -5'
33294 3' -60.5 NC_007605.1 + 36334 0.66 0.776223
Target:  5'- uUgGGGAaaacacggGGgUGCCCCCAcCACUCc -3'
miRNA:   3'- gGgCCCUaa------CCgGCGGGGGUaGUGAG- -5'
33294 3' -60.5 NC_007605.1 + 38484 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 38609 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 38734 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 38859 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 38984 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 39233 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5'
33294 3' -60.5 NC_007605.1 + 39358 0.66 0.767228
Target:  5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3'
miRNA:   3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.