miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 51673 1.1 0.004236
Target:  5'- cCCCCGAAUCCACGCAACGUCCAGGAGc -3'
miRNA:   3'- -GGGGCUUAGGUGCGUUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 53775 0.8 0.302397
Target:  5'- gCCCCGGAUCCACuuGGCGgcugCCAGGGa -3'
miRNA:   3'- -GGGGCUUAGGUGcgUUGCa---GGUCCUc -5'
33296 3' -55 NC_007605.1 + 162891 0.78 0.402061
Target:  5'- cCCCCGucauGUCCACGCAGCGga-GGGAc -3'
miRNA:   3'- -GGGGCu---UAGGUGCGUUGCaggUCCUc -5'
33296 3' -55 NC_007605.1 + 16705 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 35118 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 13636 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 28980 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 25912 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 22843 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 19774 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 32049 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 149961 0.73 0.66976
Target:  5'- gUCCUGAAUCCGCGCAGCcuGUUCAuaGAGa -3'
miRNA:   3'- -GGGGCUUAGGUGCGUUG--CAGGUc-CUC- -5'
33296 3' -55 NC_007605.1 + 5495 0.72 0.696703
Target:  5'- gCCCCGGAggCCACGCAGCaugacagagcugguGgucgCCGGGAu -3'
miRNA:   3'- -GGGGCUUa-GGUGCGUUG--------------Ca---GGUCCUc -5'
33296 3' -55 NC_007605.1 + 61997 0.72 0.71936
Target:  5'- cCCCCGcuggccUCCGCGUAcACGcCCAGGAu -3'
miRNA:   3'- -GGGGCuu----AGGUGCGU-UGCaGGUCCUc -5'
33296 3' -55 NC_007605.1 + 101558 0.71 0.757785
Target:  5'- gCCgCCGAGUUCAgGCGAaccaaGcCCAGGGGg -3'
miRNA:   3'- -GG-GGCUUAGGUgCGUUg----CaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 105574 0.71 0.757785
Target:  5'- gCCCUGA--CCGCGCGuCGaggcCCAGGAGg -3'
miRNA:   3'- -GGGGCUuaGGUGCGUuGCa---GGUCCUC- -5'
33296 3' -55 NC_007605.1 + 100227 0.7 0.812017
Target:  5'- cCUCCGGAUcCCACGU-ACGcCCGGGcAGg -3'
miRNA:   3'- -GGGGCUUA-GGUGCGuUGCaGGUCC-UC- -5'
33296 3' -55 NC_007605.1 + 62982 0.7 0.820549
Target:  5'- gUCCGAAUUCACGCGggACGUUCGuGGGc -3'
miRNA:   3'- gGGGCUUAGGUGCGU--UGCAGGU-CCUc -5'
33296 3' -55 NC_007605.1 + 40392 0.7 0.820549
Target:  5'- cCCCUGccAGUCgGCGCGGgGUCcCAGGAc -3'
miRNA:   3'- -GGGGC--UUAGgUGCGUUgCAG-GUCCUc -5'
33296 3' -55 NC_007605.1 + 76024 0.7 0.823916
Target:  5'- cCUCCaGAAcagcggcgcuacaacUCCACGCuGCGUCCAucGGAGc -3'
miRNA:   3'- -GGGG-CUU---------------AGGUGCGuUGCAGGU--CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.