miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 2068 0.67 0.93955
Target:  5'- gCCCCGggUCUaggccgaGCGCGgaGCGUgggUCAGaGAGu -3'
miRNA:   3'- -GGGGCuuAGG-------UGCGU--UGCA---GGUC-CUC- -5'
33296 3' -55 NC_007605.1 + 2354 0.7 0.836295
Target:  5'- gCCCaucUCCACGCGaagcacguacgugGCGcCCAGGAGu -3'
miRNA:   3'- gGGGcuuAGGUGCGU-------------UGCaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 3879 0.66 0.963724
Target:  5'- --gCGuAGUCCGCcaGCGGCagGUCCAGGGGa -3'
miRNA:   3'- gggGC-UUAGGUG--CGUUG--CAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 4419 0.66 0.960321
Target:  5'- uCCCUGGAUCUugccaucccCGCAACGcaccgcaaUCAGGAGa -3'
miRNA:   3'- -GGGGCUUAGGu--------GCGUUGCa-------GGUCCUC- -5'
33296 3' -55 NC_007605.1 + 5495 0.72 0.696703
Target:  5'- gCCCCGGAggCCACGCAGCaugacagagcugguGgucgCCGGGAu -3'
miRNA:   3'- -GGGGCUUa-GGUGCGUUG--------------Ca---GGUCCUc -5'
33296 3' -55 NC_007605.1 + 10668 0.68 0.908089
Target:  5'- aCCaCG-GUCCAcccCGCccucaAGCGUCCGGGAGc -3'
miRNA:   3'- gGG-GCuUAGGU---GCG-----UUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 12578 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 12659 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 13281 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 13636 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 13773 0.7 0.84827
Target:  5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3'
miRNA:   3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 15647 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 15728 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 16350 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 16705 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 16842 0.7 0.84827
Target:  5'- cCCCCGGgcgcccccaaacuuuGUCCA---GAUGUCCAGGGGu -3'
miRNA:   3'- -GGGGCU---------------UAGGUgcgUUGCAGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 18716 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 18797 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 19419 0.68 0.913988
Target:  5'- uCCCCGggUCCAC-CAGg--CCAgccGGAGg -3'
miRNA:   3'- -GGGGCuuAGGUGcGUUgcaGGU---CCUC- -5'
33296 3' -55 NC_007605.1 + 19774 0.73 0.659717
Target:  5'- cCCCUGuGUCCACcccaGUccCGUCCAGGGGg -3'
miRNA:   3'- -GGGGCuUAGGUG----CGuuGCAGGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.