Results 21 - 40 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33297 | 5' | -52.5 | NC_007605.1 | + | 38553 | 0.66 | 0.986526 |
Target: 5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3' miRNA: 3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 38678 | 0.66 | 0.986526 |
Target: 5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3' miRNA: 3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 66295 | 0.66 | 0.989498 |
Target: 5'- uGGCuCUGGUCCACA---AAGGg--GGCc -3' miRNA: 3'- -CCG-GACCAGGUGUuggUUUCaugCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 40547 | 0.66 | 0.984636 |
Target: 5'- uGGCgCggGGUCCcugccugGC-ACCAGGGUcCGGCc -3' miRNA: 3'- -CCG-Ga-CCAGG-------UGuUGGUUUCAuGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 81910 | 0.66 | 0.988083 |
Target: 5'- uGCUgaugUGGUCCggGCAcCUggGGUAcCGGCg -3' miRNA: 3'- cCGG----ACCAGG--UGUuGGuuUCAU-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 154045 | 0.66 | 0.982946 |
Target: 5'- aGGCCguUGG-CCACcccggugaAGCCGuAG-ACGGCg -3' miRNA: 3'- -CCGG--ACCaGGUG--------UUGGUuUCaUGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 33165 | 0.66 | 0.982552 |
Target: 5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3' miRNA: 3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 27028 | 0.66 | 0.982552 |
Target: 5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3' miRNA: 3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 47132 | 0.66 | 0.982946 |
Target: 5'- cGGUCUGGUCaagucgaggaUACGggcGCCAGAGUcACaGGUg -3' miRNA: 3'- -CCGGACCAG----------GUGU---UGGUUUCA-UG-CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 30097 | 0.66 | 0.982552 |
Target: 5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3' miRNA: 3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 23959 | 0.66 | 0.982552 |
Target: 5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3' miRNA: 3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 52836 | 0.66 | 0.98275 |
Target: 5'- cGGCgUUGGacUCCACGucggGCCAggugucccaguagGAGUcgGCGGCg -3' miRNA: 3'- -CCG-GACC--AGGUGU----UGGU-------------UUCA--UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 38803 | 0.66 | 0.986526 |
Target: 5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3' miRNA: 3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 38428 | 0.66 | 0.986526 |
Target: 5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3' miRNA: 3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 51686 | 0.66 | 0.982946 |
Target: 5'- gGGCCUGG-CCu---CCuuAGguuugGCGGCc -3' miRNA: 3'- -CCGGACCaGGuguuGGuuUCa----UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 77603 | 0.66 | 0.984816 |
Target: 5'- uGGCUggUGGUgCCugGG-CGGGGUGCuGGCg -3' miRNA: 3'- -CCGG--ACCA-GGugUUgGUUUCAUG-CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 38303 | 0.66 | 0.986526 |
Target: 5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3' miRNA: 3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 38927 | 0.66 | 0.986526 |
Target: 5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3' miRNA: 3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 136478 | 0.66 | 0.988231 |
Target: 5'- cGCCUuccuacGGUCCugGgGCCGGAGcggucgccccggccgGCGGCu -3' miRNA: 3'- cCGGA------CCAGGugU-UGGUUUCa--------------UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 39552 | 0.66 | 0.986526 |
Target: 5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3' miRNA: 3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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