miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 5' -52.5 NC_007605.1 + 38428 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38303 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38553 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 155592 0.66 0.982946
Target:  5'- cGGCagggGGUCCuGCggUCGAAgGUGCuGGCc -3'
miRNA:   3'- -CCGga--CCAGG-UGuuGGUUU-CAUG-CCG- -5'
33297 5' -52.5 NC_007605.1 + 103035 0.66 0.984816
Target:  5'- aGGCCUcccugGGUCCcggcggcaACAACCca---GCGGCg -3'
miRNA:   3'- -CCGGA-----CCAGG--------UGUUGGuuucaUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 38927 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38803 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38678 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 129107 0.66 0.984816
Target:  5'- cGCCUGGUCCAgCGuuGCCuccuGGGg--GGCc -3'
miRNA:   3'- cCGGACCAGGU-GU--UGGu---UUCaugCCG- -5'
33297 5' -52.5 NC_007605.1 + 40185 0.66 0.984816
Target:  5'- gGGCgUGGUCCugGgaccccgcGCCGAcuggcagggGGUccccAUGGCa -3'
miRNA:   3'- -CCGgACCAGGugU--------UGGUU---------UCA----UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 63386 0.66 0.984816
Target:  5'- -aCCUGGUCCcgGACUuuGG-GCGGCu -3'
miRNA:   3'- ccGGACCAGGugUUGGuuUCaUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 75586 0.66 0.982946
Target:  5'- uGGCCaGGcCCGaccuGCCAAAGauuguCGGCc -3'
miRNA:   3'- -CCGGaCCaGGUgu--UGGUUUCau---GCCG- -5'
33297 5' -52.5 NC_007605.1 + 66295 0.66 0.989498
Target:  5'- uGGCuCUGGUCCACA---AAGGg--GGCc -3'
miRNA:   3'- -CCG-GACCAGGUGUuggUUUCaugCCG- -5'
33297 5' -52.5 NC_007605.1 + 73122 0.66 0.984816
Target:  5'- gGGCCcUGGUgagaCACGugUcuGGgagGCGGCa -3'
miRNA:   3'- -CCGG-ACCAg---GUGUugGuuUCa--UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 154045 0.66 0.982946
Target:  5'- aGGCCguUGG-CCACcccggugaAGCCGuAG-ACGGCg -3'
miRNA:   3'- -CCGG--ACCaGGUG--------UUGGUuUCaUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 39052 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 77603 0.66 0.984816
Target:  5'- uGGCUggUGGUgCCugGG-CGGGGUGCuGGCg -3'
miRNA:   3'- -CCGG--ACCA-GGugUUgGUUUCAUG-CCG- -5'
33297 5' -52.5 NC_007605.1 + 51686 0.66 0.982946
Target:  5'- gGGCCUGG-CCu---CCuuAGguuugGCGGCc -3'
miRNA:   3'- -CCGGACCaGGuguuGGuuUCa----UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 52836 0.66 0.98275
Target:  5'- cGGCgUUGGacUCCACGucggGCCAggugucccaguagGAGUcgGCGGCg -3'
miRNA:   3'- -CCG-GACC--AGGUGU----UGGU-------------UUCA--UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 153778 0.66 0.982946
Target:  5'- aGGCUccgggUGGUgUggGCGGCCAGGGcauCGGCa -3'
miRNA:   3'- -CCGG-----ACCAgG--UGUUGGUUUCau-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.