miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 5' -52.5 NC_007605.1 + 2707 0.69 0.929711
Target:  5'- cGGCCcGGcgCCAacaggccuuucaGACCAGGGcgGCGGCu -3'
miRNA:   3'- -CCGGaCCa-GGUg-----------UUGGUUUCa-UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 3913 0.75 0.693085
Target:  5'- gGGCCUGGUCCA-GACCugacuGUG-GGCa -3'
miRNA:   3'- -CCGGACCAGGUgUUGGuuu--CAUgCCG- -5'
33297 5' -52.5 NC_007605.1 + 3987 0.67 0.980908
Target:  5'- -aCCUGGUCCGC-GCCGGgcAGacaacuCGGCc -3'
miRNA:   3'- ccGGACCAGGUGuUGGUU--UCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 7158 0.68 0.961268
Target:  5'- uGGCgUGuGUCCGaAACCAcuAGGgcaACGGCu -3'
miRNA:   3'- -CCGgAC-CAGGUgUUGGU--UUCa--UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 12221 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 12497 0.69 0.930755
Target:  5'- gGGCCUGGcUCCGCcggguGGCCcuGGGGUAagucugggaGGCa -3'
miRNA:   3'- -CCGGACC-AGGUG-----UUGG--UUUCAUg--------CCG- -5'
33297 5' -52.5 NC_007605.1 + 12985 0.68 0.964698
Target:  5'- uGCCUccccgGGUCCcaggcCAGCCGGAGggacccCGGCa -3'
miRNA:   3'- cCGGA-----CCAGGu----GUUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 13276 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 13387 0.68 0.949614
Target:  5'- uGCCUccccaccgGGUCCAucaggcCGGCCGGAGggaccccgGCGGCc -3'
miRNA:   3'- cCGGA--------CCAGGU------GUUGGUUUCa-------UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 14284 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 14752 0.66 0.982552
Target:  5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3'
miRNA:   3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5'
33297 5' -52.5 NC_007605.1 + 15290 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 15566 0.69 0.930755
Target:  5'- gGGCCUGGcUCCGCcggguGGCCcuGGGGUAagucugggaGGCa -3'
miRNA:   3'- -CCGGACC-AGGUG-----UUGG--UUUCAUg--------CCG- -5'
33297 5' -52.5 NC_007605.1 + 16054 0.68 0.964698
Target:  5'- uGCCUccccgGGUCCcaggcCAGCCGGAGggacccCGGCa -3'
miRNA:   3'- cCGGA-----CCAGGu----GUUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 16345 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 16456 0.68 0.949614
Target:  5'- uGCCUccccaccgGGUCCAucaggcCGGCCGGAGggaccccgGCGGCc -3'
miRNA:   3'- cCGGA--------CCAGGU------GUUGGUUUCa-------UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 17353 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 17821 0.66 0.982552
Target:  5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3'
miRNA:   3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5'
33297 5' -52.5 NC_007605.1 + 18359 0.66 0.989498
Target:  5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3'
miRNA:   3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5'
33297 5' -52.5 NC_007605.1 + 18635 0.69 0.930755
Target:  5'- gGGCCUGGcUCCGCcggguGGCCcuGGGGUAagucugggaGGCa -3'
miRNA:   3'- -CCGGACC-AGGUG-----UUGG--UUUCAUg--------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.