miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 5' -52.5 NC_007605.1 + 28621 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 39627 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 39752 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 123252 0.75 0.703253
Target:  5'- cGGCCUGaUCCACcacgugGGCCAGAGaugugGCGGUc -3'
miRNA:   3'- -CCGGACcAGGUG------UUGGUUUCa----UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 13276 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 16345 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 19414 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 22483 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 25552 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 39502 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 39377 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 39252 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 38253 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 38378 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 38503 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 38628 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 38753 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 38878 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 39002 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5'
33297 5' -52.5 NC_007605.1 + 39127 0.75 0.693085
Target:  5'- cGCCaGGUCCugggGCAGCCGGGGUuccUGGCg -3'
miRNA:   3'- cCGGaCCAGG----UGUUGGUUUCAu--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.