Results 41 - 60 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33297 | 5' | -52.5 | NC_007605.1 | + | 101771 | 0.66 | 0.986526 |
Target: 5'- uGCCUGGUcacgggagCCACAACCGug--GCcGCa -3' miRNA: 3'- cCGGACCA--------GGUGUUGGUuucaUGcCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 165111 | 0.66 | 0.986526 |
Target: 5'- aGCCUGGcCgGCGGCCAcacAGga-GGCc -3' miRNA: 3'- cCGGACCaGgUGUUGGUu--UCaugCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 38553 | 0.66 | 0.986526 |
Target: 5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3' miRNA: 3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 64835 | 0.66 | 0.984816 |
Target: 5'- gGGCCUGGgucacgucCCACucggAGCUGAGGU-CGGg -3' miRNA: 3'- -CCGGACCa-------GGUG----UUGGUUUCAuGCCg -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 129107 | 0.66 | 0.984816 |
Target: 5'- cGCCUGGUCCAgCGuuGCCuccuGGGg--GGCc -3' miRNA: 3'- cCGGACCAGGU-GU--UGGu---UUCaugCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 103035 | 0.66 | 0.984816 |
Target: 5'- aGGCCUcccugGGUCCcggcggcaACAACCca---GCGGCg -3' miRNA: 3'- -CCGGA-----CCAGG--------UGUUGGuuucaUGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 77603 | 0.66 | 0.984816 |
Target: 5'- uGGCUggUGGUgCCugGG-CGGGGUGCuGGCg -3' miRNA: 3'- -CCGG--ACCA-GGugUUgGUUUCAUG-CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 140019 | 0.66 | 0.984816 |
Target: 5'- aGGCCUGcGUCC-C-ACUAAGGggacaccaGGCa -3' miRNA: 3'- -CCGGAC-CAGGuGuUGGUUUCaug-----CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 63386 | 0.66 | 0.984816 |
Target: 5'- -aCCUGGUCCcgGACUuuGG-GCGGCu -3' miRNA: 3'- ccGGACCAGGugUUGGuuUCaUGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 40185 | 0.66 | 0.984816 |
Target: 5'- gGGCgUGGUCCugGgaccccgcGCCGAcuggcagggGGUccccAUGGCa -3' miRNA: 3'- -CCGgACCAGGugU--------UGGUU---------UCA----UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 164291 | 0.66 | 0.984816 |
Target: 5'- -aUCUGGgcagCCAgAGCCAGccggguccGUGCGGCu -3' miRNA: 3'- ccGGACCa---GGUgUUGGUUu-------CAUGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 73122 | 0.66 | 0.984816 |
Target: 5'- gGGCCcUGGUgagaCACGugUcuGGgagGCGGCa -3' miRNA: 3'- -CCGG-ACCAg---GUGUugGuuUCa--UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 40547 | 0.66 | 0.984636 |
Target: 5'- uGGCgCggGGUCCcugccugGC-ACCAGGGUcCGGCc -3' miRNA: 3'- -CCG-Ga-CCAGG-------UGuUGGUUUCAuGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 51686 | 0.66 | 0.982946 |
Target: 5'- gGGCCUGG-CCu---CCuuAGguuugGCGGCc -3' miRNA: 3'- -CCGGACCaGGuguuGGuuUCa----UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 153778 | 0.66 | 0.982946 |
Target: 5'- aGGCUccgggUGGUgUggGCGGCCAGGGcauCGGCa -3' miRNA: 3'- -CCGG-----ACCAgG--UGUUGGUUUCau-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 154045 | 0.66 | 0.982946 |
Target: 5'- aGGCCguUGG-CCACcccggugaAGCCGuAG-ACGGCg -3' miRNA: 3'- -CCGG--ACCaGGUG--------UUGGUuUCaUGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 155592 | 0.66 | 0.982946 |
Target: 5'- cGGCagggGGUCCuGCggUCGAAgGUGCuGGCc -3' miRNA: 3'- -CCGga--CCAGG-UGuuGGUUU-CAUG-CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 99471 | 0.66 | 0.982946 |
Target: 5'- cGGCgUGGagCugGGCCucuAAGUACaGGUc -3' miRNA: 3'- -CCGgACCagGugUUGGu--UUCAUG-CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 47132 | 0.66 | 0.982946 |
Target: 5'- cGGUCUGGUCaagucgaggaUACGggcGCCAGAGUcACaGGUg -3' miRNA: 3'- -CCGGACCAG----------GUGU---UGGUUUCA-UG-CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 75586 | 0.66 | 0.982946 |
Target: 5'- uGGCCaGGcCCGaccuGCCAAAGauuguCGGCc -3' miRNA: 3'- -CCGGaCCaGGUgu--UGGUUUCau---GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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