Results 21 - 40 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33297 | 5' | -52.5 | NC_007605.1 | + | 19123 | 0.68 | 0.964698 |
Target: 5'- uGCCUccccgGGUCCcaggcCAGCCGGAGggacccCGGCa -3' miRNA: 3'- cCGGA-----CCAGGu----GUUGGUUUCau----GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 19414 | 0.74 | 0.71336 |
Target: 5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3' miRNA: 3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 19525 | 0.68 | 0.949614 |
Target: 5'- uGCCUccccaccgGGUCCAucaggcCGGCCGGAGggaccccgGCGGCc -3' miRNA: 3'- cCGGA--------CCAGGU------GUUGGUUUCa-------UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 20422 | 0.66 | 0.988083 |
Target: 5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3' miRNA: 3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 20890 | 0.66 | 0.982552 |
Target: 5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3' miRNA: 3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 21428 | 0.66 | 0.989498 |
Target: 5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3' miRNA: 3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 21704 | 0.69 | 0.930755 |
Target: 5'- gGGCCUGGcUCCGCcggguGGCCcuGGGGUAagucugggaGGCa -3' miRNA: 3'- -CCGGACC-AGGUG-----UUGG--UUUCAUg--------CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 22192 | 0.68 | 0.964698 |
Target: 5'- uGCCUccccgGGUCCcaggcCAGCCGGAGggacccCGGCa -3' miRNA: 3'- cCGGA-----CCAGGu----GUUGGUUUCau----GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 22483 | 0.74 | 0.71336 |
Target: 5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3' miRNA: 3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 22594 | 0.68 | 0.949614 |
Target: 5'- uGCCUccccaccgGGUCCAucaggcCGGCCGGAGggaccccgGCGGCc -3' miRNA: 3'- cCGGA--------CCAGGU------GUUGGUUUCa-------UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 23491 | 0.66 | 0.988083 |
Target: 5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3' miRNA: 3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 23959 | 0.66 | 0.982552 |
Target: 5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3' miRNA: 3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 24497 | 0.66 | 0.989498 |
Target: 5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3' miRNA: 3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 24773 | 0.69 | 0.930755 |
Target: 5'- gGGCCUGGcUCCGCcggguGGCCcuGGGGUAagucugggaGGCa -3' miRNA: 3'- -CCGGACC-AGGUG-----UUGG--UUUCAUg--------CCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 25261 | 0.68 | 0.964698 |
Target: 5'- uGCCUccccgGGUCCcaggcCAGCCGGAGggacccCGGCa -3' miRNA: 3'- cCGGA-----CCAGGu----GUUGGUUUCau----GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 25552 | 0.74 | 0.71336 |
Target: 5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3' miRNA: 3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 25663 | 0.68 | 0.949614 |
Target: 5'- uGCCUccccaccgGGUCCAucaggcCGGCCGGAGggaccccgGCGGCc -3' miRNA: 3'- cCGGA--------CCAGGU------GUUGGUUUCa-------UGCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 26560 | 0.66 | 0.988083 |
Target: 5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3' miRNA: 3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 27028 | 0.66 | 0.982552 |
Target: 5'- gGGCCggguUGGUCCAgGGCCuucacuuCGGUc -3' miRNA: 3'- -CCGG----ACCAGGUgUUGGuuucau-GCCG- -5' |
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33297 | 5' | -52.5 | NC_007605.1 | + | 27566 | 0.66 | 0.989498 |
Target: 5'- aGGCCggGGUCCAgGGggacCCGAGGgccuuagaGGCc -3' miRNA: 3'- -CCGGa-CCAGGUgUU----GGUUUCaug-----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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