Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33299 | 3' | -58 | NC_007605.1 | + | 32830 | 0.67 | 0.814491 |
Target: 5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3' miRNA: 3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 29761 | 0.67 | 0.814491 |
Target: 5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3' miRNA: 3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 123523 | 0.67 | 0.8229 |
Target: 5'- gGGUaa-CCUGcCGACUCCCcUGGCCCc -3' miRNA: 3'- -UCAgagGGAC-GCUGGGGGaAUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 45099 | 0.67 | 0.796328 |
Target: 5'- aAGaCUUCCacaagcaccuguuUGCGACCCCCUgUGugCCa -3' miRNA: 3'- -UCaGAGGG-------------ACGCUGGGGGA-AUugGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 9226 | 0.67 | 0.805925 |
Target: 5'- uAGUCUUCCUG-GGCCCCUggGAgguacauguccCCCa -3' miRNA: 3'- -UCAGAGGGACgCUGGGGGaaUU-----------GGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 95028 | 0.67 | 0.805925 |
Target: 5'- cGUUUCCCUGaCGGCCUCaggGGCCa- -3' miRNA: 3'- uCAGAGGGAC-GCUGGGGgaaUUGGgc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 14416 | 0.67 | 0.814491 |
Target: 5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3' miRNA: 3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 17485 | 0.67 | 0.814491 |
Target: 5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3' miRNA: 3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 20554 | 0.67 | 0.814491 |
Target: 5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3' miRNA: 3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 23623 | 0.67 | 0.814491 |
Target: 5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3' miRNA: 3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 26692 | 0.67 | 0.814491 |
Target: 5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3' miRNA: 3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 71323 | 0.67 | 0.831143 |
Target: 5'- uGUCaCCUUGCccaGCCCCCUggccucucUGACCCu -3' miRNA: 3'- uCAGaGGGACGc--UGGGGGA--------AUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 163104 | 0.68 | 0.732676 |
Target: 5'- uGGUCUa--UGCGGCCUCCUUcucGCCCa -3' miRNA: 3'- -UCAGAgggACGCUGGGGGAAu--UGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 137979 | 0.68 | 0.751658 |
Target: 5'- cGUCUCUCUGauaAUCCCCaaugUGACCCu -3' miRNA: 3'- uCAGAGGGACgc-UGGGGGa---AUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 111324 | 0.68 | 0.779357 |
Target: 5'- uGUCUCCCca-GaACCCCCUcgagaGACCCa -3' miRNA: 3'- uCAGAGGGacgC-UGGGGGAa----UUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 134564 | 0.68 | 0.732676 |
Target: 5'- cGUCgguguugCCCUGgGGCgCCCCUc-GCCCa -3' miRNA: 3'- uCAGa------GGGACgCUG-GGGGAauUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 169517 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 170054 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 170577 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 171114 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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