miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33299 3' -58 NC_007605.1 + 152953 0.66 0.869639
Target:  5'- cGcCUCCCaUGCuaagGGCCCCCUUccuuuCCCu -3'
miRNA:   3'- uCaGAGGG-ACG----CUGGGGGAAuu---GGGc -5'
33299 3' -58 NC_007605.1 + 100740 0.66 0.869639
Target:  5'- cGGUUcCCCgcGCGGCacgCCCCU--GCCCGg -3'
miRNA:   3'- -UCAGaGGGa-CGCUG---GGGGAauUGGGC- -5'
33299 3' -58 NC_007605.1 + 109644 0.66 0.862323
Target:  5'- cAGUC-CUCUGCucgucgguGGCCUCCUgUAGCCCc -3'
miRNA:   3'- -UCAGaGGGACG--------CUGGGGGA-AUUGGGc -5'
33299 3' -58 NC_007605.1 + 88729 0.66 0.839214
Target:  5'- uGGUg-CCCUGgGAUCCCaugGACCCu -3'
miRNA:   3'- -UCAgaGGGACgCUGGGGgaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 108298 0.66 0.847105
Target:  5'- gGGcCUCCCaccaccguuaUGCcuCCCCCUUuACCCa -3'
miRNA:   3'- -UCaGAGGG----------ACGcuGGGGGAAuUGGGc -5'
33299 3' -58 NC_007605.1 + 154665 0.66 0.869639
Target:  5'- gAGcCg-CCUGCGcCCCUCggGGCCCGu -3'
miRNA:   3'- -UCaGagGGACGCuGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 75878 0.66 0.869639
Target:  5'- cGUCUCUUUGCcaaaggaccuGGCCCUCUUccCCCa -3'
miRNA:   3'- uCAGAGGGACG----------CUGGGGGAAuuGGGc -5'
33299 3' -58 NC_007605.1 + 3373 0.66 0.869639
Target:  5'- aGGUCccguggCCCUGgcCGGCCCCauuucuccgAGCCCGu -3'
miRNA:   3'- -UCAGa-----GGGAC--GCUGGGGgaa------UUGGGC- -5'
33299 3' -58 NC_007605.1 + 150759 0.66 0.872508
Target:  5'- cGGUCUcgugaCCCUGaaaGAugccuggacgcuauuCCCCCUccACCCGg -3'
miRNA:   3'- -UCAGA-----GGGACg--CU---------------GGGGGAauUGGGC- -5'
33299 3' -58 NC_007605.1 + 159990 0.66 0.839214
Target:  5'- -cUCUgCCUcCGGCCgCCCcgGGCCCGg -3'
miRNA:   3'- ucAGAgGGAcGCUGG-GGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 26692 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 95028 0.67 0.805925
Target:  5'- cGUUUCCCUGaCGGCCUCaggGGCCa- -3'
miRNA:   3'- uCAGAGGGAC-GCUGGGGgaaUUGGgc -5'
33299 3' -58 NC_007605.1 + 9226 0.67 0.805925
Target:  5'- uAGUCUUCCUG-GGCCCCUggGAgguacauguccCCCa -3'
miRNA:   3'- -UCAGAGGGACgCUGGGGGaaUU-----------GGGc -5'
33299 3' -58 NC_007605.1 + 43565 0.67 0.831143
Target:  5'- aGGUUUCCCccaUGCuuCCaCCCgUUAACCCa -3'
miRNA:   3'- -UCAGAGGG---ACGcuGG-GGG-AAUUGGGc -5'
33299 3' -58 NC_007605.1 + 34079 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 24873 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 21804 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 15666 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 37148 0.67 0.814491
Target:  5'- uGGcCaCCCaucUGCGACCCCCcgcAACCCu -3'
miRNA:   3'- -UCaGaGGG---ACGCUGGGGGaa-UUGGGc -5'
33299 3' -58 NC_007605.1 + 39817 0.67 0.814491
Target:  5'- uGGUC-CCCUG-GACCCCa---GCCCc -3'
miRNA:   3'- -UCAGaGGGACgCUGGGGgaauUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.