miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33299 3' -58 NC_007605.1 + 53294 1.09 0.002109
Target:  5'- gAGUCUCCCUGCGACCCCCUUAACCCGg -3'
miRNA:   3'- -UCAGAGGGACGCUGGGGGAAUUGGGC- -5'
33299 3' -58 NC_007605.1 + 109304 0.78 0.244598
Target:  5'- aAGUCUCCCUGUGACUCCacaUUGACgCa -3'
miRNA:   3'- -UCAGAGGGACGCUGGGGg--AAUUGgGc -5'
33299 3' -58 NC_007605.1 + 157308 0.78 0.256335
Target:  5'- cAGUCUCCCagUGCGugCCCgUUAACCa- -3'
miRNA:   3'- -UCAGAGGG--ACGCugGGGgAAUUGGgc -5'
33299 3' -58 NC_007605.1 + 53552 0.78 0.262375
Target:  5'- cGGUCUCCUUGC--CCCCCgcGACCCGc -3'
miRNA:   3'- -UCAGAGGGACGcuGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 100862 0.76 0.329208
Target:  5'- aGGUCUUCCU-CGAUCCCCU-GGCCCa -3'
miRNA:   3'- -UCAGAGGGAcGCUGGGGGAaUUGGGc -5'
33299 3' -58 NC_007605.1 + 50861 0.72 0.522759
Target:  5'- cGcCUCCCcacggccgucgggcUGCGACCCCgUgcGCCCGu -3'
miRNA:   3'- uCaGAGGG--------------ACGCUGGGGgAauUGGGC- -5'
33299 3' -58 NC_007605.1 + 61167 0.72 0.522759
Target:  5'- uGGUCUCCUUcggcaGCGACCuggCCCUcccuucccccgagcUGACCCGg -3'
miRNA:   3'- -UCAGAGGGA-----CGCUGG---GGGA--------------AUUGGGC- -5'
33299 3' -58 NC_007605.1 + 92057 0.72 0.544984
Target:  5'- aAGUCUCCCgagccCGACcaugCCCCUgaaGCCCGg -3'
miRNA:   3'- -UCAGAGGGac---GCUG----GGGGAau-UGGGC- -5'
33299 3' -58 NC_007605.1 + 103022 0.71 0.594229
Target:  5'- gAGUCUCagCUGCaGGCCuCCCUggguCCCGg -3'
miRNA:   3'- -UCAGAGg-GACG-CUGG-GGGAauu-GGGC- -5'
33299 3' -58 NC_007605.1 + 97176 0.7 0.644124
Target:  5'- cGUCUCCCcuuUGgaaUGGCCCCUg-GACCCGg -3'
miRNA:   3'- uCAGAGGG---AC---GCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 82552 0.69 0.703602
Target:  5'- cAGg--CCCUGCccucaGGCCCCCgagUGGCCUGu -3'
miRNA:   3'- -UCagaGGGACG-----CUGGGGGa--AUUGGGC- -5'
33299 3' -58 NC_007605.1 + 123285 0.69 0.713362
Target:  5'- cGGUCUCaaaCUGCuGCCCCCgg-GCCUc -3'
miRNA:   3'- -UCAGAGg--GACGcUGGGGGaauUGGGc -5'
33299 3' -58 NC_007605.1 + 89235 0.68 0.732676
Target:  5'- gGGUCaCCUUG-GAUCCCCUUAAUCUa -3'
miRNA:   3'- -UCAGaGGGACgCUGGGGGAAUUGGGc -5'
33299 3' -58 NC_007605.1 + 163104 0.68 0.732676
Target:  5'- uGGUCUa--UGCGGCCUCCUUcucGCCCa -3'
miRNA:   3'- -UCAGAgggACGCUGGGGGAAu--UGGGc -5'
33299 3' -58 NC_007605.1 + 134564 0.68 0.732676
Target:  5'- cGUCgguguugCCCUGgGGCgCCCCUc-GCCCa -3'
miRNA:   3'- uCAGa------GGGACgCUG-GGGGAauUGGGc -5'
33299 3' -58 NC_007605.1 + 137979 0.68 0.751658
Target:  5'- cGUCUCUCUGauaAUCCCCaaugUGACCCu -3'
miRNA:   3'- uCAGAGGGACgc-UGGGGGa---AUUGGGc -5'
33299 3' -58 NC_007605.1 + 58355 0.68 0.761002
Target:  5'- cGUCUCCggccuCUGCGGCCCCggccuCUgcggcCCCGg -3'
miRNA:   3'- uCAGAGG-----GACGCUGGGG-----GAauu--GGGC- -5'
33299 3' -58 NC_007605.1 + 40012 0.68 0.761002
Target:  5'- cGGUuccCUCCCccaggGCGugCCCCgcuuGCCUGg -3'
miRNA:   3'- -UCA---GAGGGa----CGCugGGGGaau-UGGGC- -5'
33299 3' -58 NC_007605.1 + 135459 0.68 0.761002
Target:  5'- cGUCaUCCCcGCGcACCCCCagu-CCCa -3'
miRNA:   3'- uCAG-AGGGaCGC-UGGGGGaauuGGGc -5'
33299 3' -58 NC_007605.1 + 170577 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.