miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33299 5' -57.8 NC_007605.1 + 153630 0.66 0.869671
Target:  5'- gGCAGGguCCCcauggGGGAGCUcugcuuuucaacggaGCUCAGCc -3'
miRNA:   3'- gCGUCUguGGG-----UCCUCGG---------------CGAGUUGa -5'
33299 5' -57.8 NC_007605.1 + 58062 0.66 0.86674
Target:  5'- cCGCGGAgGCC--GGGGCCGCggaGGCc -3'
miRNA:   3'- -GCGUCUgUGGguCCUCGGCGag-UUGa -5'
33299 5' -57.8 NC_007605.1 + 58092 0.66 0.86674
Target:  5'- cCGCGGAgGCC--GGGGCCGCggaGGCc -3'
miRNA:   3'- -GCGUCUgUGGguCCUCGGCGag-UUGa -5'
33299 5' -57.8 NC_007605.1 + 126018 0.66 0.86674
Target:  5'- cCGUgGGGCA-CCAGGAGCUGuCUCcGCUg -3'
miRNA:   3'- -GCG-UCUGUgGGUCCUCGGC-GAGuUGA- -5'
33299 5' -57.8 NC_007605.1 + 108997 0.66 0.851603
Target:  5'- gGguGGCaaGCCCGGGAGagaCUGCUCAc-- -3'
miRNA:   3'- gCguCUG--UGGGUCCUC---GGCGAGUuga -5'
33299 5' -57.8 NC_007605.1 + 156406 0.66 0.851603
Target:  5'- uGCAGGCAgCCAGGGaCCGUUUucCa -3'
miRNA:   3'- gCGUCUGUgGGUCCUcGGCGAGuuGa -5'
33299 5' -57.8 NC_007605.1 + 10681 0.66 0.851603
Target:  5'- cCGCccucaaGCGUCCGGGAGCCgggcgGCUCGGCUa -3'
miRNA:   3'- -GCGuc----UGUGGGUCCUCGG-----CGAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 51662 0.66 0.851603
Target:  5'- aCGCA-ACGUCCAGGAGCUGUUCucCg -3'
miRNA:   3'- -GCGUcUGUGGGUCCUCGGCGAGuuGa -5'
33299 5' -57.8 NC_007605.1 + 161284 0.66 0.851603
Target:  5'- gCGCAGcccaGC-CCCGGGGGCCug-CAGCa -3'
miRNA:   3'- -GCGUC----UGuGGGUCCUCGGcgaGUUGa -5'
33299 5' -57.8 NC_007605.1 + 160646 0.66 0.849264
Target:  5'- cCGCAGcCACguccagacuCCGGGGGUccagccggugcacaCGCUCAGCUc -3'
miRNA:   3'- -GCGUCuGUG---------GGUCCUCG--------------GCGAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 116973 0.66 0.843741
Target:  5'- aGCugaaGGAUGCUCAGGAGCgGCU--GCUg -3'
miRNA:   3'- gCG----UCUGUGGGUCCUCGgCGAguUGA- -5'
33299 5' -57.8 NC_007605.1 + 126161 0.66 0.843741
Target:  5'- cCGUuuGGACACCCccGGGGGCCcgGCcCGGCc -3'
miRNA:   3'- -GCG--UCUGUGGG--UCCUCGG--CGaGUUGa -5'
33299 5' -57.8 NC_007605.1 + 105076 0.66 0.835693
Target:  5'- gGCAaAC-CCCGGGGGCCGCg----- -3'
miRNA:   3'- gCGUcUGuGGGUCCUCGGCGaguuga -5'
33299 5' -57.8 NC_007605.1 + 62360 0.66 0.835693
Target:  5'- cCGCGGACAUCaAGGccauGGCCGUggAGCUg -3'
miRNA:   3'- -GCGUCUGUGGgUCC----UCGGCGagUUGA- -5'
33299 5' -57.8 NC_007605.1 + 151355 0.66 0.827464
Target:  5'- gGCGGGCACCUcccagaGGGAGCCcacCAGCc -3'
miRNA:   3'- gCGUCUGUGGG------UCCUCGGcgaGUUGa -5'
33299 5' -57.8 NC_007605.1 + 53642 0.67 0.819063
Target:  5'- uGCccucGACuuCCAGGAGCCGUgUUAGCUc -3'
miRNA:   3'- gCGu---CUGugGGUCCUCGGCG-AGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 154190 0.67 0.819063
Target:  5'- aCGguGACGCUgCAGG-GCCGCaCGAUg -3'
miRNA:   3'- -GCguCUGUGG-GUCCuCGGCGaGUUGa -5'
33299 5' -57.8 NC_007605.1 + 124167 0.67 0.7929
Target:  5'- gGCuGugGCCgCAGGGGUCGaggaUCAGCc -3'
miRNA:   3'- gCGuCugUGG-GUCCUCGGCg---AGUUGa -5'
33299 5' -57.8 NC_007605.1 + 47186 0.67 0.7929
Target:  5'- gGCAGAcCACCauagauuuCAGGAGaucaaGCUCAGCa -3'
miRNA:   3'- gCGUCU-GUGG--------GUCCUCgg---CGAGUUGa -5'
33299 5' -57.8 NC_007605.1 + 88390 0.67 0.7929
Target:  5'- --gGGAUA-CCAGGAGCCGC-CGGCc -3'
miRNA:   3'- gcgUCUGUgGGUCCUCGGCGaGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.