miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 5' -62.7 NC_007605.1 + 27445 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 40241 0.66 0.658502
Target:  5'- aGGGGUccaGggGGcAGCCgCGGCCCaGCGc -3'
miRNA:   3'- -CCCCG---UuaCC-UCGGgGCUGGGcCGCc -5'
33300 5' -62.7 NC_007605.1 + 24376 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 139058 0.66 0.658502
Target:  5'- gGGGGgGggGGGGCUCUGuaacAUuuGGUGGg -3'
miRNA:   3'- -CCCCgUuaCCUCGGGGC----UGggCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 18238 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 30514 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 15169 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 21307 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 12521 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 15590 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 24797 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 21728 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 18659 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 153924 0.66 0.657546
Target:  5'- cGGGGag--GGGGCCagGGCCUgcagguuGGCGGg -3'
miRNA:   3'- -CCCCguuaCCUCGGggCUGGG-------CCGCC- -5'
33300 5' -62.7 NC_007605.1 + 34003 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 27866 0.66 0.657546
Target:  5'- uGGGGUAAgucUGGgaggcagagggucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CCCCGUU---ACC-------------UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 40168 0.66 0.648935
Target:  5'- gGGGGCGucccgGGAccccaGCCCCcAgCCGGCa- -3'
miRNA:   3'- -CCCCGUua---CCU-----CGGGGcUgGGCCGcc -5'
33300 5' -62.7 NC_007605.1 + 50358 0.66 0.648935
Target:  5'- cGGGGCcgcGGUGGGcuGCCCCcgaggacgGGCgCCGGCc- -3'
miRNA:   3'- -CCCCG---UUACCU--CGGGG--------CUG-GGCCGcc -5'
33300 5' -62.7 NC_007605.1 + 88904 0.66 0.648935
Target:  5'- uGGGGCGuaugGGGGCUCgGGgCUGG-GGa -3'
miRNA:   3'- -CCCCGUua--CCUCGGGgCUgGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 40326 0.67 0.639356
Target:  5'- aGGuGCAccGGA-CCagcaGACCCGGCGGc -3'
miRNA:   3'- cCC-CGUuaCCUcGGgg--CUGGGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.