miRNA display CGI


Results 21 - 40 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 3' -69.2 NC_007605.1 + 39103 0.66 0.339183
Target:  5'- cGGCCGCCCggcuGCCCcGG-AGC-GCCa -3'
miRNA:   3'- uCCGGCGGGac--CGGGcCCgUCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 162981 0.66 0.341978
Target:  5'- cGGCCGCCagucccaugugcucgCUcugcgaGGgCCGGGCccCGGCCg -3'
miRNA:   3'- uCCGGCGG---------------GA------CCgGGCCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 40394 0.66 0.346203
Target:  5'- gAGGCCGCCgcaaGGaCgCCGGGC--CGGCUg -3'
miRNA:   3'- -UCCGGCGGga--CC-G-GGCCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 19055 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 18892 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 68239 0.66 0.367148
Target:  5'- gGGGCCGUUgaGGCCCacguugucugcucGGuaGCAGCGGaCUc -3'
miRNA:   3'- -UCCGGCGGgaCCGGG-------------CC--CGUCGCC-GG- -5'
33301 3' -69.2 NC_007605.1 + 40100 0.66 0.360556
Target:  5'- cGGUC-CgCUGGCCCcacccuggGGGUAGCcGCCg -3'
miRNA:   3'- uCCGGcGgGACCGGG--------CCCGUCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 105217 0.66 0.375317
Target:  5'- cGGCCGCgUguaGGagaaCCCGGGUgacGGCGGUg -3'
miRNA:   3'- uCCGGCGgGa--CC----GGGCCCG---UCGCCGg -5'
33301 3' -69.2 NC_007605.1 + 168802 0.66 0.346203
Target:  5'- gGGGCCGUCgCgGGCCCGGu--G-GGCCc -3'
miRNA:   3'- -UCCGGCGG-GaCCGGGCCcguCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 28098 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 143209 0.66 0.346203
Target:  5'- gAGGCCGCCgcaaGGaCgCCGGGC--CGGCUg -3'
miRNA:   3'- -UCCGGCGGga--CC-G-GGCCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 151108 0.66 0.346203
Target:  5'- cGGCCGCagCCU-GCCCcu-CGGCGGCCc -3'
miRNA:   3'- uCCGGCG--GGAcCGGGcccGUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 158595 0.66 0.375317
Target:  5'- uAGGCUGCaCCguggUGGCggGGGguGCGGgCu -3'
miRNA:   3'- -UCCGGCG-GG----ACCGggCCCguCGCCgG- -5'
33301 3' -69.2 NC_007605.1 + 28261 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 34399 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 64136 0.66 0.338486
Target:  5'- gAGGCUgauGUCCUGG-CCGGGCGccuGCuccaccgccuuaaGGCCg -3'
miRNA:   3'- -UCCGG---CGGGACCgGGCCCGU---CG-------------CCGG- -5'
33301 3' -69.2 NC_007605.1 + 80459 0.66 0.367886
Target:  5'- uGGCCGCCggaUGGCCUauGGGUuaccaggcauacAGCaGCUg -3'
miRNA:   3'- uCCGGCGGg--ACCGGG--CCCG------------UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 15823 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 12917 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 10703 0.66 0.367886
Target:  5'- cGGGCgGCUC-GGCUaaGGagGGCGGCCu -3'
miRNA:   3'- -UCCGgCGGGaCCGGgcCCg-UCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.