Results 1 - 20 of 385 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 10703 | 0.66 | 0.367886 |
Target: 5'- cGGGCgGCUC-GGCUaaGGagGGCGGCCu -3' miRNA: 3'- -UCCGgCGGGaCCGGgcCCg-UCGCCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 12754 | 0.66 | 0.367886 |
Target: 5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3' miRNA: 3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 28098 | 0.66 | 0.367886 |
Target: 5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3' miRNA: 3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 40229 | 0.66 | 0.353328 |
Target: 5'- uGGCacagGCCUaggGGUCCaggGGGCAgccGCGGCCc -3' miRNA: 3'- uCCGg---CGGGa--CCGGG---CCCGU---CGCCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 168802 | 0.66 | 0.346203 |
Target: 5'- gGGGCCGUCgCgGGCCCGGu--G-GGCCc -3' miRNA: 3'- -UCCGGCGG-GaCCGGGCCcguCgCCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 15823 | 0.66 | 0.367886 |
Target: 5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3' miRNA: 3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 40100 | 0.66 | 0.360556 |
Target: 5'- cGGUC-CgCUGGCCCcacccuggGGGUAGCcGCCg -3' miRNA: 3'- uCCGGcGgGACCGGG--------CCCGUCGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 25029 | 0.66 | 0.367886 |
Target: 5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3' miRNA: 3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 151108 | 0.66 | 0.346203 |
Target: 5'- cGGCCGCagCCU-GCCCcu-CGGCGGCCc -3' miRNA: 3'- uCCGGCG--GGAcCGGGcccGUCGCCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 18892 | 0.66 | 0.367886 |
Target: 5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3' miRNA: 3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 153567 | 0.66 | 0.339183 |
Target: 5'- uGGCCGCCUccuuuaCCCGGGCAuCcGCCa -3' miRNA: 3'- uCCGGCGGGacc---GGGCCCGUcGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 64136 | 0.66 | 0.338486 |
Target: 5'- gAGGCUgauGUCCUGG-CCGGGCGccuGCuccaccgccuuaaGGCCg -3' miRNA: 3'- -UCCGG---CGGGACCgGGCCCGU---CG-------------CCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 31167 | 0.66 | 0.367886 |
Target: 5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3' miRNA: 3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 95715 | 0.66 | 0.353328 |
Target: 5'- gAGGCgGaagaCCaGGagcCCCGGGCGGCucaggaucagGGCCa -3' miRNA: 3'- -UCCGgCg---GGaCC---GGGCCCGUCG----------CCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 40295 | 0.66 | 0.353328 |
Target: 5'- cGGCCGagccaCCaggGGCCCGG-CGGgGGUg -3' miRNA: 3'- uCCGGCg----GGa--CCGGGCCcGUCgCCGg -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 68239 | 0.66 | 0.367148 |
Target: 5'- gGGGCCGUUgaGGCCCacguugucugcucGGuaGCAGCGGaCUc -3' miRNA: 3'- -UCCGGCGGgaCCGGG-------------CC--CGUCGCC-GG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 143209 | 0.66 | 0.346203 |
Target: 5'- gAGGCCGCCgcaaGGaCgCCGGGC--CGGCUg -3' miRNA: 3'- -UCCGGCGGga--CC-G-GGCCCGucGCCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 21960 | 0.66 | 0.367886 |
Target: 5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3' miRNA: 3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 40394 | 0.66 | 0.346203 |
Target: 5'- gAGGCCGCCgcaaGGaCgCCGGGC--CGGCUg -3' miRNA: 3'- -UCCGGCGGga--CC-G-GGCCCGucGCCGG- -5' |
|||||||
33301 | 3' | -69.2 | NC_007605.1 | + | 162043 | 0.66 | 0.353328 |
Target: 5'- cGGCCGUacaCCcGGCCCu-GCAG-GGCCg -3' miRNA: 3'- uCCGGCG---GGaCCGGGccCGUCgCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home