miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 3' -69.2 NC_007605.1 + 142551 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141735 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141837 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141939 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 142041 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 142143 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 142245 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 142347 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 142449 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141634 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141532 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141430 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 159999 0.79 0.046479
Target:  5'- cGGCCGCCCcgGGCCCGGGaCcGCgcccuccucugGGCCg -3'
miRNA:   3'- uCCGGCGGGa-CCGGGCCC-GuCG-----------CCGG- -5'
33301 3' -69.2 NC_007605.1 + 53831 0.78 0.050073
Target:  5'- cGGCCGCU---GCCCGGGCcagGGCGGCCu -3'
miRNA:   3'- uCCGGCGGgacCGGGCCCG---UCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 140818 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 140920 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141022 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141124 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141226 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 141328 0.77 0.062555
Target:  5'- gGGGUUccgGCCCUGgaGCUCGGGgGGCGGCCg -3'
miRNA:   3'- -UCCGG---CGGGAC--CGGGCCCgUCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.