miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 3' -69.2 NC_007605.1 + 2670 0.74 0.0964
Target:  5'- cAGaCCGCCaCcGGCCCcggagcagaugccaGGGCGGCGGCCc -3'
miRNA:   3'- -UCcGGCGG-GaCCGGG--------------CCCGUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 2712 0.69 0.230482
Target:  5'- cGG-CGCCaacaGGCCUuucagaccaGGGCGGCGGCUg -3'
miRNA:   3'- uCCgGCGGga--CCGGG---------CCCGUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 2879 0.74 0.096868
Target:  5'- -cGCCGCCCUGGCaucugcuCCGGGgcCGGUGGCg -3'
miRNA:   3'- ucCGGCGGGACCG-------GGCCC--GUCGCCGg -5'
33301 3' -69.2 NC_007605.1 + 2915 0.68 0.28068
Target:  5'- -cGCCGCCCUGGUCUGaaaGGCcuguuGGC-GCCg -3'
miRNA:   3'- ucCGGCGGGACCGGGC---CCG-----UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 3374 0.66 0.360556
Target:  5'- cAGGUC-CCgUGGCCCuGGC--CGGCCc -3'
miRNA:   3'- -UCCGGcGGgACCGGGcCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 4412 0.72 0.145689
Target:  5'- uGGagaugGCCCUGG-CCGGGCAGCGGg- -3'
miRNA:   3'- uCCgg---CGGGACCgGGCCCGUCGCCgg -5'
33301 3' -69.2 NC_007605.1 + 4850 0.68 0.28068
Target:  5'- uGGCCGUgCUauGcGcCCCGGGCaccAGgGGCCa -3'
miRNA:   3'- uCCGGCGgGA--C-C-GGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 5075 0.7 0.209765
Target:  5'- aAGGCCGCCaggaggcuuucaUGGCCCcuggugcccgGGGCgcauAGCacGGCCa -3'
miRNA:   3'- -UCCGGCGGg-----------ACCGGG----------CCCG----UCG--CCGG- -5'
33301 3' -69.2 NC_007605.1 + 6132 0.67 0.31214
Target:  5'- uGGGCagGUgUgGGCCacgGGGCAGCuGGCCa -3'
miRNA:   3'- -UCCGg-CGgGaCCGGg--CCCGUCG-CCGG- -5'
33301 3' -69.2 NC_007605.1 + 10568 0.72 0.132566
Target:  5'- cAGGCCcggGCCCaGGCCUugcaGGGCAGaCGGUUa -3'
miRNA:   3'- -UCCGG---CGGGaCCGGG----CCCGUC-GCCGG- -5'
33301 3' -69.2 NC_007605.1 + 10703 0.66 0.367886
Target:  5'- cGGGCgGCUC-GGCUaaGGagGGCGGCCu -3'
miRNA:   3'- -UCCGgCGGGaCCGGgcCCg-UCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 10770 0.66 0.38285
Target:  5'- cGuCUGCCCUgcaaGGCCUGGGCccgGGCCu -3'
miRNA:   3'- uCcGGCGGGA----CCGGGCCCGucgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 12375 0.79 0.044223
Target:  5'- aAGGUgG-CCUGGCCCGGGguGCguGGCCa -3'
miRNA:   3'- -UCCGgCgGGACCGGGCCCguCG--CCGG- -5'
33301 3' -69.2 NC_007605.1 + 12444 0.68 0.286765
Target:  5'- uGGCCgaGCCCgGGUCUgggaggucugGGGUGGCGaGCCu -3'
miRNA:   3'- uCCGG--CGGGaCCGGG----------CCCGUCGC-CGG- -5'
33301 3' -69.2 NC_007605.1 + 12542 0.7 0.196861
Target:  5'- aGGGUCGgCCUaGGCCCGGGgaAGUGGa- -3'
miRNA:   3'- -UCCGGCgGGA-CCGGGCCCg-UCGCCgg -5'
33301 3' -69.2 NC_007605.1 + 12715 0.7 0.192423
Target:  5'- cAGGCCcCCCaGaCCCGGGUcuCGGCCa -3'
miRNA:   3'- -UCCGGcGGGaCcGGGCCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 12754 0.66 0.367886
Target:  5'- cGGCCccGCgCCUGGCgCCuccucgGGGCcAGCcGCCg -3'
miRNA:   3'- uCCGG--CG-GGACCG-GG------CCCG-UCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 12917 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 13000 0.69 0.219423
Target:  5'- cAGGCCagccggagggacCCCggcaGCCCGGGCGGCcccagaGGCCg -3'
miRNA:   3'- -UCCGGc-----------GGGac--CGGGCCCGUCG------CCGG- -5'
33301 3' -69.2 NC_007605.1 + 13209 0.77 0.067184
Target:  5'- gGGGCCGCCCgGGCugCCGGGgucccucCGGCuGGCCu -3'
miRNA:   3'- -UCCGGCGGGaCCG--GGCCC-------GUCG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.