miRNA display CGI


Results 41 - 60 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 3' -69.2 NC_007605.1 + 153567 0.66 0.339183
Target:  5'- uGGCCGCCUccuuuaCCCGGGCAuCcGCCa -3'
miRNA:   3'- uCCGGCGGGacc---GGGCCCGUcGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 74856 0.66 0.339183
Target:  5'- cGGCuCGCCagcGGUCCGGGCAcucaaaGGUCu -3'
miRNA:   3'- uCCG-GCGGga-CCGGGCCCGUcg----CCGG- -5'
33301 3' -69.2 NC_007605.1 + 19055 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 15986 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 39103 0.66 0.339183
Target:  5'- cGGCCGCCCggcuGCCCcGG-AGC-GCCa -3'
miRNA:   3'- uCCGGCGGGac--CGGGcCCgUCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 34399 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 12917 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 25192 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 64136 0.66 0.338486
Target:  5'- gAGGCUgauGUCCUGG-CCGGGCGccuGCuccaccgccuuaaGGCCg -3'
miRNA:   3'- -UCCGG---CGGGACCgGGCCCGU---CG-------------CCGG- -5'
33301 3' -69.2 NC_007605.1 + 34958 0.67 0.332265
Target:  5'- cGGCUGgCCUGGuggaCCCGGGga--GGCCa -3'
miRNA:   3'- uCCGGCgGGACC----GGGCCCgucgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 25751 0.67 0.332265
Target:  5'- cGGCUGgCCUGGuggaCCCGGGga--GGCCa -3'
miRNA:   3'- uCCGGCgGGACC----GGGCCCgucgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 61678 0.67 0.332265
Target:  5'- gAGGCCGUggaCagacGaGCCCGGcGCaccAGCGGCCc -3'
miRNA:   3'- -UCCGGCGg--Ga---C-CGGGCC-CG---UCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 62588 0.67 0.332265
Target:  5'- gAGGCCGCCCggaguaGGUaguaGGcGUGGUGGCg -3'
miRNA:   3'- -UCCGGCGGGa-----CCGgg--CC-CGUCGCCGg -5'
33301 3' -69.2 NC_007605.1 + 134194 0.67 0.332265
Target:  5'- cGGucCCGaCCCgccGcCCCGGGCAcguucagcGCGGCCg -3'
miRNA:   3'- uCC--GGC-GGGac-C-GGGCCCGU--------CGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 19613 0.67 0.332265
Target:  5'- cGGCUGgCCUGGuggaCCCGGGga--GGCCa -3'
miRNA:   3'- uCCGGCgGGACC----GGGCCCgucgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 16544 0.67 0.332265
Target:  5'- cGGCUGgCCUGGuggaCCCGGGga--GGCCa -3'
miRNA:   3'- uCCGGCgGGACC----GGGCCCgucgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 13475 0.67 0.332265
Target:  5'- cGGCUGgCCUGGuggaCCCGGGga--GGCCa -3'
miRNA:   3'- uCCGGCgGGACC----GGGCCCgucgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 58259 0.67 0.332265
Target:  5'- cGGCC-UCCgcGGCCCcGGCcuccGCGGCCc -3'
miRNA:   3'- uCCGGcGGGa-CCGGGcCCGu---CGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 31889 0.67 0.332265
Target:  5'- cGGCUGgCCUGGuggaCCCGGGga--GGCCa -3'
miRNA:   3'- uCCGGCgGGACC----GGGCCCgucgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 28820 0.67 0.332265
Target:  5'- cGGCUGgCCUGGuggaCCCGGGga--GGCCa -3'
miRNA:   3'- uCCGGCgGGACC----GGGCCCgucgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.