miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 3666 0.7 0.512697
Target:  5'- --aGCCCGGGgUAGGUccccugGACCUGCCg -3'
miRNA:   3'- uacUGGGUCCgGUCCGa-----UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 4054 0.68 0.60206
Target:  5'- cGUGGCCUGGGCguGaaGCUGACCUuuggcucgGCCUc -3'
miRNA:   3'- -UACUGGGUCCGguC--CGAUUGGA--------CGGA- -5'
33302 3' -59.6 NC_007605.1 + 4386 0.68 0.581883
Target:  5'- -cGACggGGGCCuGG-UGACCUGCCUg -3'
miRNA:   3'- uaCUGggUCCGGuCCgAUUGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 4416 0.73 0.33827
Target:  5'- gAUGGCCCuGGCCGGGCagcggggagUGACCaucacuaUGCCg -3'
miRNA:   3'- -UACUGGGuCCGGUCCG---------AUUGG-------ACGGa -5'
33302 3' -59.6 NC_007605.1 + 4632 0.66 0.742263
Target:  5'- -cGGCCCAGagacgguguugcGCCAGucGCUGcGCCUGCUg -3'
miRNA:   3'- uaCUGGGUC------------CGGUC--CGAU-UGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 10569 0.66 0.712958
Target:  5'- -aGGCCCGGGcCCAGGC---CUUGCa- -3'
miRNA:   3'- uaCUGGGUCC-GGUCCGauuGGACGga -5'
33302 3' -59.6 NC_007605.1 + 12186 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 12221 0.67 0.672979
Target:  5'- -aGGCCgGGGuCCAGGggGACCcgaggGCCUu -3'
miRNA:   3'- uaCUGGgUCC-GGUCCgaUUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 12427 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 12631 0.71 0.429261
Target:  5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 12725 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 12733 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 12907 0.7 0.474689
Target:  5'- -aGACCCGGGUCuGGggGGCCUGUg- -3'
miRNA:   3'- uaCUGGGUCCGGuCCgaUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 13675 0.72 0.381555
Target:  5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3'
miRNA:   3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 13886 0.69 0.526297
Target:  5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3'
miRNA:   3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 14758 0.78 0.161428
Target:  5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3'
miRNA:   3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5'
33302 3' -59.6 NC_007605.1 + 15007 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 15255 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 15290 0.67 0.672979
Target:  5'- -aGGCCgGGGuCCAGGggGACCcgaggGCCUu -3'
miRNA:   3'- uaCUGGgUCC-GGUCCgaUUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 15496 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.