miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 22882 0.72 0.381555
Target:  5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3'
miRNA:   3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 169891 0.73 0.331536
Target:  5'- cGUGACCCGGGgcuCCGGGgUGACCcaGCCa -3'
miRNA:   3'- -UACUGGGUCC---GGUCCgAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 170429 0.73 0.331536
Target:  5'- cGUGACCCGGGgcuCCGGGgUGACCcaGCCa -3'
miRNA:   3'- -UACUGGGUCC---GGUCCgAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 170951 0.73 0.331536
Target:  5'- cGUGACCCGGGgcuCCGGGgUGACCcaGCCa -3'
miRNA:   3'- -UACUGGGUCC---GGUCCgAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 171489 0.73 0.331536
Target:  5'- cGUGACCCGGGgcuCCGGGgUGACCcaGCCa -3'
miRNA:   3'- -UACUGGGUCC---GGUCCgAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 4416 0.73 0.33827
Target:  5'- gAUGGCCCuGGCCGGGCagcggggagUGACCaucacuaUGCCg -3'
miRNA:   3'- -UACUGGGuCCGGUCCG---------AUUGG-------ACGGa -5'
33302 3' -59.6 NC_007605.1 + 13675 0.72 0.381555
Target:  5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3'
miRNA:   3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 16744 0.72 0.381555
Target:  5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3'
miRNA:   3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 19813 0.72 0.381555
Target:  5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3'
miRNA:   3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 154285 0.74 0.309806
Target:  5'- -gGGCgCAGGCC-GGCUAGCCUGUg- -3'
miRNA:   3'- uaCUGgGUCCGGuCCGAUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 16955 0.74 0.287841
Target:  5'- -aGGCUCAGGCCAGcGCgcccugucaccaGGCCUGCCa -3'
miRNA:   3'- uaCUGGGUCCGGUC-CGa-----------UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 33421 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 47595 0.76 0.228211
Target:  5'- ---cUCCAGGCUccuggaucugGGGCUGGCCUGCCUg -3'
miRNA:   3'- uacuGGGUCCGG----------UCCGAUUGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 75577 0.76 0.239468
Target:  5'- --uACCCugcauGGCCAGGCccGACCUGCCa -3'
miRNA:   3'- uacUGGGu----CCGGUCCGa-UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 15007 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 18076 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 21145 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 24214 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 27283 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 30352 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.