miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 3' -65.7 NC_007605.1 + 99355 0.66 0.532855
Target:  5'- cGGCGC-GGGagccGGCG-GCCuCGGAgguGCCCGg -3'
miRNA:   3'- -CCGCGaCCC----CCGUgCGG-GUCU---CGGGC- -5'
33303 3' -65.7 NC_007605.1 + 34046 0.66 0.530096
Target:  5'- aGUGgaGGGGGauCGCCCgggucucuguuggcAGAGUCCGg -3'
miRNA:   3'- cCGCgaCCCCCguGCGGG--------------UCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 12564 0.66 0.530096
Target:  5'- aGUGgaGGGGGauCGCCCgggucucuguuggcAGAGUCCGg -3'
miRNA:   3'- cCGCgaCCCCCguGCGGG--------------UCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 21771 0.66 0.530096
Target:  5'- aGUGgaGGGGGauCGCCCgggucucuguuggcAGAGUCCGg -3'
miRNA:   3'- cCGCgaCCCCCguGCGGG--------------UCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 30977 0.66 0.530096
Target:  5'- aGUGgaGGGGGauCGCCCgggucucuguuggcAGAGUCCGg -3'
miRNA:   3'- cCGCgaCCCCCguGCGGG--------------UCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 18702 0.66 0.530096
Target:  5'- aGUGgaGGGGGauCGCCCgggucucuguuggcAGAGUCCGg -3'
miRNA:   3'- cCGCgaCCCCCguGCGGG--------------UCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 24840 0.66 0.530096
Target:  5'- aGUGgaGGGGGauCGCCCgggucucuguuggcAGAGUCCGg -3'
miRNA:   3'- cCGCgaCCCCCguGCGGG--------------UCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 15633 0.66 0.530096
Target:  5'- aGUGgaGGGGGauCGCCCgggucucuguuggcAGAGUCCGg -3'
miRNA:   3'- cCGCgaCCCCCguGCGGG--------------UCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 141341 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141239 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141443 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 142054 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141748 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 140831 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 142666 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 142156 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 142564 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 140933 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 140729 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 142462 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.