miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 3' -65.7 NC_007605.1 + 60703 0.66 0.487613
Target:  5'- cGCGCUugacGGGGGCA-GCUUGGAGgCUGu -3'
miRNA:   3'- cCGCGA----CCCCCGUgCGGGUCUCgGGC- -5'
33303 3' -65.7 NC_007605.1 + 115959 0.66 0.487613
Target:  5'- uGCuGCUcGGGGCAugcUGCCCGGcGGCCUa -3'
miRNA:   3'- cCG-CGAcCCCCGU---GCGGGUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 162572 0.66 0.478779
Target:  5'- aGGUGUaGcGGGGCucguCGUCCGGccgcuGCCCGu -3'
miRNA:   3'- -CCGCGaC-CCCCGu---GCGGGUCu----CGGGC- -5'
33303 3' -65.7 NC_007605.1 + 40617 0.66 0.478779
Target:  5'- -aCGCUcgGGGGGUGCacaccuCCCAGccGGCCCGg -3'
miRNA:   3'- ccGCGA--CCCCCGUGc-----GGGUC--UCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 143432 0.66 0.478779
Target:  5'- -aCGCUcgGGGGGUGCacaccuCCCAGccGGCCCGg -3'
miRNA:   3'- ccGCGA--CCCCCGUGc-----GGGUC--UCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 60847 0.66 0.478779
Target:  5'- gGGCGCaguccgaccgccUGGGGGgACuCCCcggcaucggaGGGGCCCc -3'
miRNA:   3'- -CCGCG------------ACCCCCgUGcGGG----------UCUCGGGc -5'
33303 3' -65.7 NC_007605.1 + 171049 0.66 0.4779
Target:  5'- uGGCGCggccGGGGGCGCGaccgccucucuguCCCc--GCCCc -3'
miRNA:   3'- -CCGCGa---CCCCCGUGC-------------GGGucuCGGGc -5'
33303 3' -65.7 NC_007605.1 + 171587 0.66 0.4779
Target:  5'- uGGCGCggccGGGGGCGCGaccgccucucuguCCCc--GCCCc -3'
miRNA:   3'- -CCGCGa---CCCCCGUGC-------------GGGucuCGGGc -5'
33303 3' -65.7 NC_007605.1 + 170527 0.66 0.4779
Target:  5'- uGGCGCggccGGGGGCGCGaccgccucucuguCCCc--GCCCc -3'
miRNA:   3'- -CCGCGa---CCCCCGUGC-------------GGGucuCGGGc -5'
33303 3' -65.7 NC_007605.1 + 169989 0.66 0.4779
Target:  5'- uGGCGCggccGGGGGCGCGaccgccucucuguCCCc--GCCCc -3'
miRNA:   3'- -CCGCGa---CCCCCGUGC-------------GGGucuCGGGc -5'
33303 3' -65.7 NC_007605.1 + 55740 0.67 0.470024
Target:  5'- aGGCGggagagaUGGGGGC--GCCUGGGGCCg- -3'
miRNA:   3'- -CCGCg------ACCCCCGugCGGGUCUCGGgc -5'
33303 3' -65.7 NC_007605.1 + 137333 0.67 0.470024
Target:  5'- gGGCuGCUGaGGGUugGuguccuCCCGGGGUCCa -3'
miRNA:   3'- -CCG-CGACcCCCGugC------GGGUCUCGGGc -5'
33303 3' -65.7 NC_007605.1 + 147231 0.67 0.46481
Target:  5'- uGGUGCacuccaucugguaaGGGGGCugGUgCGGAcGCCUGu -3'
miRNA:   3'- -CCGCGa-------------CCCCCGugCGgGUCU-CGGGC- -5'
33303 3' -65.7 NC_007605.1 + 52887 0.67 0.461351
Target:  5'- cGGCGCUGGgcGGGCGgaagcuacacUGgCCAGGGUUCu -3'
miRNA:   3'- -CCGCGACC--CCCGU----------GCgGGUCUCGGGc -5'
33303 3' -65.7 NC_007605.1 + 163677 0.67 0.461351
Target:  5'- aGGCGCUGuacaccGGGCugGCgCAGGcgcugcgcGUCCGa -3'
miRNA:   3'- -CCGCGACc-----CCCGugCGgGUCU--------CGGGC- -5'
33303 3' -65.7 NC_007605.1 + 30745 0.67 0.452764
Target:  5'- gGGUGCagGGGGGCAggcgGCCCuacuGGGGaCCGg -3'
miRNA:   3'- -CCGCGa-CCCCCGUg---CGGG----UCUCgGGC- -5'
33303 3' -65.7 NC_007605.1 + 33814 0.67 0.452764
Target:  5'- gGGUGCagGGGGGCAggcgGCCCuacuGGGGaCCGg -3'
miRNA:   3'- -CCGCGa-CCCCCGUg---CGGG----UCUCgGGC- -5'
33303 3' -65.7 NC_007605.1 + 21538 0.67 0.452764
Target:  5'- gGGUGCagGGGGGCAggcgGCCCuacuGGGGaCCGg -3'
miRNA:   3'- -CCGCGa-CCCCCGUg---CGGG----UCUCgGGC- -5'
33303 3' -65.7 NC_007605.1 + 171317 0.67 0.452764
Target:  5'- gGGgGCgggagcgGGGGGCG-GCgCgGGAGCCUGc -3'
miRNA:   3'- -CCgCGa------CCCCCGUgCG-GgUCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 24607 0.67 0.452764
Target:  5'- gGGUGCagGGGGGCAggcgGCCCuacuGGGGaCCGg -3'
miRNA:   3'- -CCGCGa-CCCCCGUg---CGGG----UCUCgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.