miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 113997 0.67 0.908075
Target:  5'- gCCGG-GGCccacGuGAACAUCCUGCgUGGCu -3'
miRNA:   3'- gGGCUaCUGa---C-CUUGUGGGACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 73596 0.68 0.88893
Target:  5'- gCCCGGgaGCUGGuggaGCUCgcgcGCUGGCa -3'
miRNA:   3'- -GGGCUacUGACCuug-UGGGa---CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 111897 0.68 0.888257
Target:  5'- aCCUGGUGAggugugcCaGGAAUGCCUcuaUGUUGGCa -3'
miRNA:   3'- -GGGCUACU-------GaCCUUGUGGG---ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 18217 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 27424 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 33562 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 21286 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 24355 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 30493 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 75556 0.68 0.875055
Target:  5'- aCCUGcagGGCUucacuaGAAUACCCUGCaUGGCc -3'
miRNA:   3'- -GGGCua-CUGAc-----CUUGUGGGACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 134565 0.68 0.875055
Target:  5'- gUCGGUGuugccCUGGGGCGCCCcucgcccaUGCUugcGGCg -3'
miRNA:   3'- gGGCUACu----GACCUUGUGGG--------ACGA---CCG- -5'
33303 5' -55.4 NC_007605.1 + 38713 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39212 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39712 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39587 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39462 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39337 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39087 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38962 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38838 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.