miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 23158 0.67 0.927267
Target:  5'- gCCCGGgggucgGGCUGGGccGCcaggggggcaaaaggGCUCUGgaGGCa -3'
miRNA:   3'- -GGGCUa-----CUGACCU--UG---------------UGGGACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 24355 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 24809 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 24831 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 25308 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 27424 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 27878 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 27900 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 28377 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 30493 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 30947 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 30968 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 31446 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 33562 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 34016 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 34037 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 34515 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 38338 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38463 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38588 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.