miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 2297 0.66 0.953009
Target:  5'- uUCCGcgGACcaugUGGAAgGCCUUGCcauccagucUGGUc -3'
miRNA:   3'- -GGGCuaCUG----ACCUUgUGGGACG---------ACCG- -5'
33303 5' -55.4 NC_007605.1 + 3667 0.68 0.860329
Target:  5'- gCCCGggGuaggucccCUGGAcCugCC-GCUGGCg -3'
miRNA:   3'- -GGGCuaCu-------GACCUuGugGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 4394 0.69 0.844797
Target:  5'- gCCUGGUGACcugccuggUGGAGaugGCCCUgGCcgGGCa -3'
miRNA:   3'- -GGGCUACUG--------ACCUUg--UGGGA-CGa-CCG- -5'
33303 5' -55.4 NC_007605.1 + 10963 0.7 0.770142
Target:  5'- gCCgGGUGACUGGuggggggcaucugggGGC-CCUUGUUGGUa -3'
miRNA:   3'- -GGgCUACUGACC---------------UUGuGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 12533 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 12555 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 13033 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 15148 0.7 0.797471
Target:  5'- gCCCGggGACUgGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA-CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 15602 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 15624 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 16102 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 18217 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 18671 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 18693 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 19170 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 21286 0.68 0.884859
Target:  5'- gCCCGggGACUagGGAACugaggagggcaugaaGCCCUGgCUGauGCa -3'
miRNA:   3'- -GGGCuaCUGA--CCUUG---------------UGGGAC-GAC--CG- -5'
33303 5' -55.4 NC_007605.1 + 21740 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 21762 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 22171 0.67 0.921902
Target:  5'- cCCCGgcGGCUGGccccgaggaGGCGCCaggcgcggggccgguCgGCUGGCu -3'
miRNA:   3'- -GGGCuaCUGACC---------UUGUGG---------------GaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 22239 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.