miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 18693 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 136557 0.66 0.935364
Target:  5'- gCCCGcgGGCgGGGACccggguGCCUUcUUGGCg -3'
miRNA:   3'- -GGGCuaCUGaCCUUG------UGGGAcGACCG- -5'
33303 5' -55.4 NC_007605.1 + 60052 0.66 0.940121
Target:  5'- gCgGGUGGCUGGAACAg---GCgGGCg -3'
miRNA:   3'- gGgCUACUGACCUUGUgggaCGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 12555 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 15624 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 27900 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 30968 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 132091 0.66 0.944646
Target:  5'- gCUGGUGGCUGG-GCucCCCUG--GGCa -3'
miRNA:   3'- gGGCUACUGACCuUGu-GGGACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 52485 0.66 0.948941
Target:  5'- uCCCGGaGGCUGGAcuccugacCAgCCUGUaGGUg -3'
miRNA:   3'- -GGGCUaCUGACCUu-------GUgGGACGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 126098 0.66 0.928312
Target:  5'- gCCCGGaGACUGGuGGCcCuCCUGCgaagggaagauggGGCa -3'
miRNA:   3'- -GGGCUaCUGACC-UUGuG-GGACGa------------CCG- -5'
33303 5' -55.4 NC_007605.1 + 73645 0.66 0.934875
Target:  5'- cCCCGAUGAC-GGAcucaugcGgGCCUggGCcgGGCu -3'
miRNA:   3'- -GGGCUACUGaCCU-------UgUGGGa-CGa-CCG- -5'
33303 5' -55.4 NC_007605.1 + 24831 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 2297 0.66 0.953009
Target:  5'- uUCCGcgGACcaugUGGAAgGCCUUGCcauccagucUGGUc -3'
miRNA:   3'- -GGGCuaCUG----ACCUUgUGGGACG---------ACCG- -5'
33303 5' -55.4 NC_007605.1 + 34037 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 21762 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 110754 0.66 0.953009
Target:  5'- aUCUGA--ACUGGGGCAUaaaCaggGCUGGCa -3'
miRNA:   3'- -GGGCUacUGACCUUGUGg--Ga--CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 112684 0.66 0.940121
Target:  5'- gCCCGAUGACccGAugcuCGCCCgcagGUaugGGCa -3'
miRNA:   3'- -GGGCUACUGacCUu---GUGGGa---CGa--CCG- -5'
33303 5' -55.4 NC_007605.1 + 45380 0.66 0.939655
Target:  5'- aCCGGaGGCUGGcgaccauucgcagGGC-CCCUGCcuccUGGCc -3'
miRNA:   3'- gGGCUaCUGACC-------------UUGuGGGACG----ACCG- -5'
33303 5' -55.4 NC_007605.1 + 92393 0.66 0.953009
Target:  5'- gCCUauGGUGGCaGGAAucauCACCCgguUGCUGGg -3'
miRNA:   3'- -GGG--CUACUGaCCUU----GUGGG---ACGACCg -5'
33303 5' -55.4 NC_007605.1 + 84738 0.66 0.940121
Target:  5'- aCC-AUGuACUuGGACACCCUGCaUGGa -3'
miRNA:   3'- gGGcUAC-UGAcCUUGUGGGACG-ACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.