miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 38838 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 4394 0.69 0.844797
Target:  5'- gCCUGGUGACcugccuggUGGAGaugGCCCUgGCcgGGCa -3'
miRNA:   3'- -GGGCUACUG--------ACCUUg--UGGGA-CGa-CCG- -5'
33303 5' -55.4 NC_007605.1 + 103636 0.69 0.850322
Target:  5'- gCCUGGUG-CUGGAaguuaaccgccauaACGCCauCUGCgUGGCc -3'
miRNA:   3'- -GGGCUACuGACCU--------------UGUGG--GACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 77593 0.69 0.852661
Target:  5'- gCCUGAcgcuUGGCUGGuggUGCCUgggcggggUGCUGGCg -3'
miRNA:   3'- -GGGCU----ACUGACCuu-GUGGG--------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 3667 0.68 0.860329
Target:  5'- gCCCGggGuaggucccCUGGAcCugCC-GCUGGCg -3'
miRNA:   3'- -GGGCuaCu-------GACCUuGugGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 38338 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38463 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38588 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38713 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 157366 0.69 0.836744
Target:  5'- uCCCGggGGCcguggGGGGCACCggugUGgUGGCg -3'
miRNA:   3'- -GGGCuaCUGa----CCUUGUGGg---ACgACCG- -5'
33303 5' -55.4 NC_007605.1 + 49783 0.7 0.814972
Target:  5'- -gCGGUGGgUGGAACGCUCcagcuugcggcgaaGCUGGCu -3'
miRNA:   3'- ggGCUACUgACCUUGUGGGa-------------CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 156221 0.7 0.811522
Target:  5'- cCCUGGcUGcCUGcAAUGCUCUGCUGGCc -3'
miRNA:   3'- -GGGCU-ACuGACcUUGUGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 152465 0.76 0.480311
Target:  5'- aCCCGggGGCcauggUGGAgaGCAUCUUGCUGGUc -3'
miRNA:   3'- -GGGCuaCUG-----ACCU--UGUGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 121143 0.73 0.616964
Target:  5'- gCUGGUGGCUGGgu-GCCCUccaagucGCUGGCu -3'
miRNA:   3'- gGGCUACUGACCuugUGGGA-------CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 135714 0.71 0.747489
Target:  5'- cCUCGAUuaccuCUGGGACuuccuguCCCUGCUGGa -3'
miRNA:   3'- -GGGCUAcu---GACCUUGu------GGGACGACCg -5'
33303 5' -55.4 NC_007605.1 + 159626 0.7 0.766411
Target:  5'- gCCCGGU-ACUGGGgguGCGCCgUGaaGGCg -3'
miRNA:   3'- -GGGCUAcUGACCU---UGUGGgACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 61846 0.7 0.793898
Target:  5'- cCUCGAUGACcgagucUGGGACGCCgUaaGUUGGUc -3'
miRNA:   3'- -GGGCUACUG------ACCUUGUGGgA--CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 158149 0.7 0.793898
Target:  5'- cUCCGucUGGCUGGcguagcggcGCACCCcGUUGGCc -3'
miRNA:   3'- -GGGCu-ACUGACCu--------UGUGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 165360 0.7 0.802786
Target:  5'- gCCCGAgGGCgUGGAgcccGCACCaaCUGC-GGCa -3'
miRNA:   3'- -GGGCUaCUG-ACCU----UGUGG--GACGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 48814 0.7 0.810656
Target:  5'- gCCaGAggcUGGCUGagccaccGAGCGCCCgcucggGCUGGCg -3'
miRNA:   3'- gGG-CU---ACUGAC-------CUUGUGGGa-----CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.