miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 54989 1.12 0.00238
Target:  5'- gCCCGAUGACUGGAACACCCUGCUGGCc -3'
miRNA:   3'- -GGGCUACUGACCUUGUGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 91324 0.81 0.261268
Target:  5'- gCCGGgucaagUGGCUGGGGCACCgggGCUGGCg -3'
miRNA:   3'- gGGCU------ACUGACCUUGUGGga-CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 152465 0.76 0.480311
Target:  5'- aCCCGggGGCcauggUGGAgaGCAUCUUGCUGGUc -3'
miRNA:   3'- -GGGCuaCUG-----ACCU--UGUGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 27878 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 30947 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 34016 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 21740 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 18671 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 15602 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 12533 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 24809 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 121143 0.73 0.616964
Target:  5'- gCUGGUGGCUGGgu-GCCCUccaagucGCUGGCu -3'
miRNA:   3'- gGGCUACUGACCuugUGGGA-------CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 157461 0.73 0.628099
Target:  5'- aCCGcAUG-CUGGGAgACCUUGCgcgGGCc -3'
miRNA:   3'- gGGC-UACuGACCUUgUGGGACGa--CCG- -5'
33303 5' -55.4 NC_007605.1 + 61879 0.72 0.678604
Target:  5'- aCCG-UGGCgggGGAcuACGCCaugaUGCUGGCc -3'
miRNA:   3'- gGGCuACUGa--CCU--UGUGGg---ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 135714 0.71 0.747489
Target:  5'- cCUCGAUuaccuCUGGGACuuccuguCCCUGCUGGa -3'
miRNA:   3'- -GGGCUAcu---GACCUUGu------GGGACGACCg -5'
33303 5' -55.4 NC_007605.1 + 105807 0.71 0.757004
Target:  5'- aCCUGGgagucuCUGGGACGCCC--CUGGCa -3'
miRNA:   3'- -GGGCUacu---GACCUUGUGGGacGACCG- -5'
33303 5' -55.4 NC_007605.1 + 159626 0.7 0.766411
Target:  5'- gCCCGGU-ACUGGGgguGCGCCgUGaaGGCg -3'
miRNA:   3'- -GGGCUAcUGACCU---UGUGGgACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 132626 0.7 0.770142
Target:  5'- cCCCGGgugggauccaUGGCUGGAuuuccaggaaaggagGCcggcccGCCCggcgGCUGGCg -3'
miRNA:   3'- -GGGCU----------ACUGACCU---------------UG------UGGGa---CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 10963 0.7 0.770142
Target:  5'- gCCgGGUGACUGGuggggggcaucugggGGC-CCUUGUUGGUa -3'
miRNA:   3'- -GGgCUACUGACC---------------UUGuGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 137120 0.7 0.775702
Target:  5'- cCCCGAgUGGgUGuAGCagggGCCCUGCUGGg -3'
miRNA:   3'- -GGGCU-ACUgACcUUG----UGGGACGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.