miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33307 5' -57.7 NC_007605.1 + 2279 0.66 0.870302
Target:  5'- gUACGauuccgGC-CAGGUG-GCGGCGGGCu- -3'
miRNA:   3'- -GUGCa-----CGcGUCCACaUGCCGCCUGua -5'
33307 5' -57.7 NC_007605.1 + 162244 0.66 0.839566
Target:  5'- aCGCGgcccugcaggGC-CGGGUGUACGGCcGGCGg -3'
miRNA:   3'- -GUGCa---------CGcGUCCACAUGCCGcCUGUa -5'
33307 5' -57.7 NC_007605.1 + 144817 0.66 0.831405
Target:  5'- aCAgGUGUGCAGGUGUGCaugacaaaucuuGGgGGucuCAg -3'
miRNA:   3'- -GUgCACGCGUCCACAUG------------CCgCCu--GUa -5'
33307 5' -57.7 NC_007605.1 + 132077 0.67 0.81456
Target:  5'- uUugGUGUGCGGGUGcugGUGGCuGGGCu- -3'
miRNA:   3'- -GugCACGCGUCCACa--UGCCG-CCUGua -5'
33307 5' -57.7 NC_007605.1 + 122538 0.67 0.805891
Target:  5'- -cCGUGCGU--GUGU-CGGUGGACAa -3'
miRNA:   3'- guGCACGCGucCACAuGCCGCCUGUa -5'
33307 5' -57.7 NC_007605.1 + 61617 0.68 0.740416
Target:  5'- cCGCGacgGCuGUGGGUGUgggggcgGCGGCGGACc- -3'
miRNA:   3'- -GUGCa--CG-CGUCCACA-------UGCCGCCUGua -5'
33307 5' -57.7 NC_007605.1 + 110283 0.69 0.692327
Target:  5'- -cCGUGCGUGGaUGUcACGGCGGAgCAUa -3'
miRNA:   3'- guGCACGCGUCcACA-UGCCGCCU-GUA- -5'
33307 5' -57.7 NC_007605.1 + 61973 0.7 0.621824
Target:  5'- -uCGUGUGCAGGag-GCGGCGGGgAg -3'
miRNA:   3'- guGCACGCGUCCacaUGCCGCCUgUa -5'
33307 5' -57.7 NC_007605.1 + 61441 0.71 0.581528
Target:  5'- uCGCG-GCGgGGGcg-GCGGCGGGCGUa -3'
miRNA:   3'- -GUGCaCGCgUCCacaUGCCGCCUGUA- -5'
33307 5' -57.7 NC_007605.1 + 169604 0.72 0.52226
Target:  5'- uGCGgGCGguGGaugGCGGCGGACGUu -3'
miRNA:   3'- gUGCaCGCguCCacaUGCCGCCUGUA- -5'
33307 5' -57.7 NC_007605.1 + 171201 0.72 0.52226
Target:  5'- uGCGgGCGguGGaugGCGGCGGACGUu -3'
miRNA:   3'- gUGCaCGCguCCacaUGCCGCCUGUA- -5'
33307 5' -57.7 NC_007605.1 + 170663 0.72 0.52226
Target:  5'- uGCGgGCGguGGaugGCGGCGGACGUu -3'
miRNA:   3'- gUGCaCGCguCCacaUGCCGCCUGUA- -5'
33307 5' -57.7 NC_007605.1 + 170141 0.72 0.52226
Target:  5'- uGCGgGCGguGGaugGCGGCGGACGUu -3'
miRNA:   3'- gUGCaCGCguCCacaUGCCGCCUGUA- -5'
33307 5' -57.7 NC_007605.1 + 56358 1.05 0.004199
Target:  5'- gCACGUGCGCAGGUGUACGGCGGACAUc -3'
miRNA:   3'- -GUGCACGCGUCCACAUGCCGCCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.