Results 21 - 40 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33314 | 5' | -62.4 | NC_007605.1 | + | 35452 | 0.66 | 0.633638 |
Target: 5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3' miRNA: 3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 26245 | 0.66 | 0.633638 |
Target: 5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3' miRNA: 3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 32383 | 0.66 | 0.633638 |
Target: 5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3' miRNA: 3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 30809 | 0.66 | 0.662726 |
Target: 5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3' miRNA: 3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 29314 | 0.66 | 0.633638 |
Target: 5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3' miRNA: 3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 33878 | 0.66 | 0.662726 |
Target: 5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3' miRNA: 3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 85324 | 0.66 | 0.672387 |
Target: 5'- uGGCAcuaaGGGCUccugcuGGucaGCAGGGGCCGAc -3' miRNA: 3'- -CCGU----UCCGGcc----CCug-CGUCCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 21602 | 0.66 | 0.662726 |
Target: 5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3' miRNA: 3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 58563 | 0.66 | 0.659823 |
Target: 5'- gGGCGGGGgugcCCGGGGcCGCauccuucuggcaguGGGGGUCa- -3' miRNA: 3'- -CCGUUCC----GGCCCCuGCG--------------UCCUCGGcu -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 27740 | 0.66 | 0.662726 |
Target: 5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3' miRNA: 3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 67679 | 0.66 | 0.672387 |
Target: 5'- cGGCu-GGCCGccguGGccaACGCAGGcacGGCCGGg -3' miRNA: 3'- -CCGuuCCGGCc---CC---UGCGUCC---UCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 13970 | 0.66 | 0.633638 |
Target: 5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3' miRNA: 3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 23176 | 0.66 | 0.633638 |
Target: 5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3' miRNA: 3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 143131 | 0.66 | 0.691613 |
Target: 5'- cGGCGGGGauGGGGguGCGCucccaGGCCGGa -3' miRNA: 3'- -CCGUUCCggCCCC--UGCGucc--UCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 50561 | 0.66 | 0.672387 |
Target: 5'- gGGCGGGuGCCugGGGGAU--GGGAaaGCCGGa -3' miRNA: 3'- -CCGUUC-CGG--CCCCUGcgUCCU--CGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 83010 | 0.66 | 0.691613 |
Target: 5'- aGCAAGccgauGCCGGGGGgGCAucuGGcuCCGAg -3' miRNA: 3'- cCGUUC-----CGGCCCCUgCGU---CCucGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 95906 | 0.66 | 0.691613 |
Target: 5'- gGGCAggagGGGCaggaGGGGcaggagGgGCAGGAGCagGAg -3' miRNA: 3'- -CCGU----UCCGg---CCCC------UgCGUCCUCGg-CU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 20108 | 0.66 | 0.633638 |
Target: 5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3' miRNA: 3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 144325 | 0.66 | 0.653043 |
Target: 5'- aGGCGGGGCUcauGGAUuaGCAGGGGCUu- -3' miRNA: 3'- -CCGUUCCGGcc-CCUG--CGUCCUCGGcu -5' |
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33314 | 5' | -62.4 | NC_007605.1 | + | 55543 | 0.66 | 0.691613 |
Target: 5'- gGGCAA--CCGGcuGACGCuGGAGCCa- -3' miRNA: 3'- -CCGUUccGGCCc-CUGCGuCCUCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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