miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33314 5' -62.4 NC_007605.1 + 110764 0.66 0.653043
Target:  5'- gGGCAuaaacaGGGCUGGcaGGACGUGcaGGCCGAc -3'
miRNA:   3'- -CCGU------UCCGGCC--CCUGCGUccUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 24671 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 21602 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 96344 0.66 0.653043
Target:  5'- gGGCAGGaGCaggaGGGGcaggagGgGCAGGAGCagGAg -3'
miRNA:   3'- -CCGUUC-CGg---CCCC------UgCGUCCUCGg-CU- -5'
33314 5' -62.4 NC_007605.1 + 153892 0.66 0.637521
Target:  5'- uGGCccucGGGGuuGaGGGGCGCccaggcguccggggaGGGGGCCa- -3'
miRNA:   3'- -CCG----UUCCggC-CCCUGCG---------------UCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 57362 0.66 0.661759
Target:  5'- aGCAGGaggaggaGCCGGGGuagcugaugGCAGGGGCUGc -3'
miRNA:   3'- cCGUUC-------CGGCCCCug-------CGUCCUCGGCu -5'
33314 5' -62.4 NC_007605.1 + 96422 0.66 0.653043
Target:  5'- gGGCAGGaGCaggaGGGGcaggagGgGCAGGAGCagGAg -3'
miRNA:   3'- -CCGUUC-CGg---CCCC------UgCGUCCUCGg-CU- -5'
33314 5' -62.4 NC_007605.1 + 168952 0.66 0.653043
Target:  5'- gGGauguAGGcCCGGGGGgauuUGCGGGGucuGCCGGa -3'
miRNA:   3'- -CCgu--UCC-GGCCCCU----GCGUCCU---CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 129378 0.66 0.652073
Target:  5'- uGCAgGGGCUggaaaagGGGGugGCGGuuguaGGCCGAg -3'
miRNA:   3'- cCGU-UCCGG-------CCCCugCGUCc----UCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 78227 0.66 0.637521
Target:  5'- uGGCAuuugGGGuuGGGGuagucacuggugaGguGGAGCUGGu -3'
miRNA:   3'- -CCGU----UCCggCCCCug-----------CguCCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 27740 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 57518 0.66 0.633638
Target:  5'- uGGagaAGGaGCCGGGGcggcugauUGCGGGGGCUGc -3'
miRNA:   3'- -CCg--UUC-CGGCCCCu-------GCGUCCUCGGCu -5'
33314 5' -62.4 NC_007605.1 + 58563 0.66 0.659823
Target:  5'- gGGCGGGGgugcCCGGGGcCGCauccuucuggcaguGGGGGUCa- -3'
miRNA:   3'- -CCGUUCC----GGCCCCuGCG--------------UCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 18533 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 96470 0.66 0.653043
Target:  5'- gGGCAGGaGCaggaGGGGcaggagGgGCAGGAGCagGAg -3'
miRNA:   3'- -CCGUUC-CGg---CCCC------UgCGUCCUCGg-CU- -5'
33314 5' -62.4 NC_007605.1 + 30809 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 55543 0.66 0.691613
Target:  5'- gGGCAA--CCGGcuGACGCuGGAGCCa- -3'
miRNA:   3'- -CCGUUccGGCCc-CUGCGuCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 15464 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 157435 0.66 0.633638
Target:  5'- cGGCGGGGgugcucCCGcGGGcCGCGgauGGGGCUGGg -3'
miRNA:   3'- -CCGUUCC------GGC-CCCuGCGU---CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 96296 0.66 0.653043
Target:  5'- gGGCAGGaGCaggaGGGGcaggagGgGCAGGAGCagGAg -3'
miRNA:   3'- -CCGUUC-CGg---CCCC------UgCGUCCUCGg-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.