miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33314 5' -62.4 NC_007605.1 + 60999 1.1 0.000766
Target:  5'- aGGCAAGGCCGGGGACGCAGGAGCCGAg -3'
miRNA:   3'- -CCGUUCCGGCCCCUGCGUCCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 58046 0.82 0.078593
Target:  5'- gGGCugGAGGCCGGGGcCGCGGaGGCCGGg -3'
miRNA:   3'- -CCG--UUCCGGCCCCuGCGUCcUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 58149 0.82 0.080607
Target:  5'- gGGCcgcaGAGGCCGGGGcCGCAGaGGCCGGa -3'
miRNA:   3'- -CCG----UUCCGGCCCCuGCGUCcUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 58119 0.82 0.080607
Target:  5'- gGGCcgcgGAGGCCGGGGcCGCAGaGGCCGGg -3'
miRNA:   3'- -CCG----UUCCGGCCCCuGCGUCcUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 27608 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 30677 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 33746 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 24539 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 21470 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 18401 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 12263 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 15332 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 58074 0.8 0.096151
Target:  5'- gGGCcgcgGAGGCCGGGGcCGCGGaGGCCGGg -3'
miRNA:   3'- -CCG----UUCCGGCCCCuGCGUCcUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 171319 0.79 0.1145
Target:  5'- gGGCGGGaGCgGGGGgcgGCGCGGGAGCCu- -3'
miRNA:   3'- -CCGUUC-CGgCCCC---UGCGUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 170781 0.79 0.1145
Target:  5'- gGGCGGGaGCgGGGGgcgGCGCGGGAGCCu- -3'
miRNA:   3'- -CCGUUC-CGgCCCC---UGCGUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 170259 0.79 0.1145
Target:  5'- gGGCGGGaGCgGGGGgcgGCGCGGGAGCCu- -3'
miRNA:   3'- -CCGUUC-CGgCCCC---UGCGUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 169721 0.79 0.1145
Target:  5'- gGGCGGGaGCgGGGGgcgGCGCGGGAGCCu- -3'
miRNA:   3'- -CCGUUC-CGgCCCC---UGCGUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 125873 0.77 0.165278
Target:  5'- uGCAAGGCCGGGGACagacCGGGGGaCCu- -3'
miRNA:   3'- cCGUUCCGGCCCCUGc---GUCCUC-GGcu -5'
33314 5' -62.4 NC_007605.1 + 55740 0.77 0.1693
Target:  5'- aGGCGGGaGagaUGGGGGCGCcuGGGGCCGAg -3'
miRNA:   3'- -CCGUUC-Cg--GCCCCUGCGu-CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 133932 0.75 0.219608
Target:  5'- aGGCAGGGa-GGGGGCGCugcuggugugAGGAGCCc- -3'
miRNA:   3'- -CCGUUCCggCCCCUGCG----------UCCUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.