miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33314 5' -62.4 NC_007605.1 + 2390 0.72 0.328823
Target:  5'- uGGCAGGGCUGcuGGugGCAGacagcuGGCCGAc -3'
miRNA:   3'- -CCGUUCCGGCc-CCugCGUCc-----UCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 170630 0.74 0.257896
Target:  5'- cGGCGggGGGUCGGGGucCGCGGGcuCCGGg -3'
miRNA:   3'- -CCGU--UCCGGCCCCu-GCGUCCucGGCU- -5'
33314 5' -62.4 NC_007605.1 + 171167 0.74 0.257896
Target:  5'- cGGCGggGGGUCGGGGucCGCGGGcuCCGGg -3'
miRNA:   3'- -CCGU--UCCGGCCCCu-GCGUCCucGGCU- -5'
33314 5' -62.4 NC_007605.1 + 68219 0.74 0.269796
Target:  5'- uGGcCAAGGCUcaGGACGUGGGGGCCGu -3'
miRNA:   3'- -CC-GUUCCGGccCCUGCGUCCUCGGCu -5'
33314 5' -62.4 NC_007605.1 + 61444 0.73 0.27591
Target:  5'- cGGCGGGGgCGGcggcGGGCGUagAGGGGCCGc -3'
miRNA:   3'- -CCGUUCCgGCC----CCUGCG--UCCUCGGCu -5'
33314 5' -62.4 NC_007605.1 + 37189 0.72 0.314923
Target:  5'- aGGCcAGaGCCGGGGACagaGCAGGGGgaGGg -3'
miRNA:   3'- -CCGuUC-CGGCCCCUG---CGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 96561 0.72 0.321817
Target:  5'- aGGCAguggAGGCCGGGGuCG-AGGAgguaguggagGCCGGg -3'
miRNA:   3'- -CCGU----UCCGGCCCCuGCgUCCU----------CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 50681 0.72 0.321817
Target:  5'- uGGgGAGGC--GGGugGCGGaGGGCCGAa -3'
miRNA:   3'- -CCgUUCCGgcCCCugCGUC-CUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 48437 0.72 0.321817
Target:  5'- gGGCGGGGgCguaGGGGAggagcuCGUGGGGGCCGGg -3'
miRNA:   3'- -CCGUUCCgG---CCCCU------GCGUCCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 170107 0.74 0.257896
Target:  5'- cGGCGggGGGUCGGGGucCGCGGGcuCCGGg -3'
miRNA:   3'- -CCGU--UCCGGCCCCu-GCGUCCucGGCU- -5'
33314 5' -62.4 NC_007605.1 + 169570 0.74 0.257896
Target:  5'- cGGCGggGGGUCGGGGucCGCGGGcuCCGGg -3'
miRNA:   3'- -CCGU--UCCGGCCCCu-GCGUCCucGGCU- -5'
33314 5' -62.4 NC_007605.1 + 55740 0.77 0.1693
Target:  5'- aGGCGGGaGagaUGGGGGCGCcuGGGGCCGAg -3'
miRNA:   3'- -CCGUUC-Cg--GCCCCUGCGu-CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 58119 0.82 0.080607
Target:  5'- gGGCcgcgGAGGCCGGGGcCGCAGaGGCCGGg -3'
miRNA:   3'- -CCG----UUCCGGCCCCuGCGUCcUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 58149 0.82 0.080607
Target:  5'- gGGCcgcaGAGGCCGGGGcCGCAGaGGCCGGa -3'
miRNA:   3'- -CCG----UUCCGGCCCCuGCGUCcUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 58074 0.8 0.096151
Target:  5'- gGGCcgcgGAGGCCGGGGcCGCGGaGGCCGGg -3'
miRNA:   3'- -CCG----UUCCGGCCCCuGCGUCcUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 169721 0.79 0.1145
Target:  5'- gGGCGGGaGCgGGGGgcgGCGCGGGAGCCu- -3'
miRNA:   3'- -CCGUUC-CGgCCCC---UGCGUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 170259 0.79 0.1145
Target:  5'- gGGCGGGaGCgGGGGgcgGCGCGGGAGCCu- -3'
miRNA:   3'- -CCGUUC-CGgCCCC---UGCGUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 170781 0.79 0.1145
Target:  5'- gGGCGGGaGCgGGGGgcgGCGCGGGAGCCu- -3'
miRNA:   3'- -CCGUUC-CGgCCCC---UGCGUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 171319 0.79 0.1145
Target:  5'- gGGCGGGaGCgGGGGgcgGCGCGGGAGCCu- -3'
miRNA:   3'- -CCGUUC-CGgCCCC---UGCGUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 125873 0.77 0.165278
Target:  5'- uGCAAGGCCGGGGACagacCGGGGGaCCu- -3'
miRNA:   3'- cCGUUCCGGCCCCUGc---GUCCUC-GGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.