miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33314 5' -62.4 NC_007605.1 + 2390 0.72 0.328823
Target:  5'- uGGCAGGGCUGcuGGugGCAGacagcuGGCCGAc -3'
miRNA:   3'- -CCGUUCCGGCc-CCugCGUCc-----UCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 3253 0.69 0.485872
Target:  5'- aGCAcugGGGcCCGGGGggcGCGCGuagcccgagaugcacGGGGCCGGg -3'
miRNA:   3'- cCGU---UCC-GGCCCC---UGCGU---------------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 3596 0.69 0.509599
Target:  5'- cGGCGGuGGaaaCCGGGGACGCcAGGucGuuGAc -3'
miRNA:   3'- -CCGUU-CC---GGCCCCUGCG-UCCu-CggCU- -5'
33314 5' -62.4 NC_007605.1 + 4288 0.66 0.653043
Target:  5'- aGGCGGacGaGCCGGucucGGgGCAGGAGgCCGAg -3'
miRNA:   3'- -CCGUU--C-CGGCCc---CUgCGUCCUC-GGCU- -5'
33314 5' -62.4 NC_007605.1 + 12230 0.71 0.388868
Target:  5'- gGGUugcuGAGGCCGGGGuC-CAGGGGgacCCGAg -3'
miRNA:   3'- -CCG----UUCCGGCCCCuGcGUCCUC---GGCU- -5'
33314 5' -62.4 NC_007605.1 + 12263 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 12395 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 13228 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 13567 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 13757 0.68 0.518854
Target:  5'- uGGaCGAGGCUGGGcc--CGGGAGCCGu -3'
miRNA:   3'- -CC-GUUCCGGCCCcugcGUCCUCGGCu -5'
33314 5' -62.4 NC_007605.1 + 13970 0.66 0.633638
Target:  5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3'
miRNA:   3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 15183 0.7 0.446975
Target:  5'- gGGUcucugGAGGaCGGGGACGgaGGGGGCCuGAa -3'
miRNA:   3'- -CCG-----UUCCgGCCCCUGCg-UCCUCGG-CU- -5'
33314 5' -62.4 NC_007605.1 + 15299 0.71 0.388868
Target:  5'- gGGUugcuGAGGCCGGGGuC-CAGGGGgacCCGAg -3'
miRNA:   3'- -CCG----UUCCGGCCCCuGcGUCCUC---GGCU- -5'
33314 5' -62.4 NC_007605.1 + 15332 0.8 0.096151
Target:  5'- gGGgGAGGCUGGGGugGCAGGAGggGAg -3'
miRNA:   3'- -CCgUUCCGGCCCCugCGUCCUCggCU- -5'
33314 5' -62.4 NC_007605.1 + 15464 0.66 0.662726
Target:  5'- cGGCAGcuGGCCccgaGGaGGCGCccggaguGGGGCCGGu -3'
miRNA:   3'- -CCGUU--CCGGc---CC-CUGCGu------CCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 16297 0.66 0.662726
Target:  5'- gGGCGAGGaaccggccuCUGGGGcCGCccGGGcuGCCGGg -3'
miRNA:   3'- -CCGUUCC---------GGCCCCuGCG--UCCu-CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 16636 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 16826 0.68 0.518854
Target:  5'- uGGaCGAGGCUGGGcc--CGGGAGCCGu -3'
miRNA:   3'- -CC-GUUCCGGCCCcugcGUCCUCGGCu -5'
33314 5' -62.4 NC_007605.1 + 17039 0.66 0.633638
Target:  5'- uGGacaAAGuuUGGGGGCGCccGGGGGUCGGg -3'
miRNA:   3'- -CCg--UUCcgGCCCCUGCG--UCCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 18252 0.7 0.446975
Target:  5'- gGGUcucugGAGGaCGGGGACGgaGGGGGCCuGAa -3'
miRNA:   3'- -CCG-----UUCCgGCCCCUGCg-UCCUCGG-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.