Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33324 | 3' | -56.7 | NC_007605.1 | + | 68382 | 1.07 | 0.003432 |
Target: 5'- aGUGAAGGCCUCGUAUGGCCCCACACUc -3' miRNA: 3'- -CACUUCCGGAGCAUACCGGGGUGUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 84582 | 0.72 | 0.566318 |
Target: 5'- uGUGggGGCCUgGgauucaggcGUGGCUCUugGCUg -3' miRNA: 3'- -CACuuCCGGAgCa--------UACCGGGGugUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 59582 | 0.71 | 0.596651 |
Target: 5'- gGUGAcAGGUCcCGgcUGGCCCgGCGCUu -3' miRNA: 3'- -CACU-UCCGGaGCauACCGGGgUGUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 163815 | 0.7 | 0.688225 |
Target: 5'- -aGAGGGCCUCGagacccGGCCCCuCAa- -3' miRNA: 3'- caCUUCCGGAGCaua---CCGGGGuGUga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 135028 | 0.69 | 0.71822 |
Target: 5'- -cGAGGGCCUCuGgcacgccGUGGCCCUgaGCAUg -3' miRNA: 3'- caCUUCCGGAG-Ca------UACCGGGG--UGUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 53424 | 0.69 | 0.728083 |
Target: 5'- cUGGcgcGGGUCg-GUGUGGCCCCugGCc -3' miRNA: 3'- cACU---UCCGGagCAUACCGGGGugUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 134680 | 0.69 | 0.747554 |
Target: 5'- ----uGGCCUCcccgGUGGCCCCAaGCUg -3' miRNA: 3'- cacuuCCGGAGca--UACCGGGGUgUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 62242 | 0.69 | 0.747554 |
Target: 5'- cGUGguGGCCUCGcu--GCCCCugGCc -3' miRNA: 3'- -CACuuCCGGAGCauacCGGGGugUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 88000 | 0.69 | 0.747554 |
Target: 5'- -aGGAGGCCcgCGgcaggaGGCCCCGCGg- -3' miRNA: 3'- caCUUCCGGa-GCaua---CCGGGGUGUga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 85201 | 0.69 | 0.757144 |
Target: 5'- --aGAGGCCUCGgggGGCgCCCACu-- -3' miRNA: 3'- cacUUCCGGAGCauaCCG-GGGUGuga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 85261 | 0.69 | 0.757144 |
Target: 5'- --aGAGGCCUCGgggGGCgCCCACu-- -3' miRNA: 3'- cacUUCCGGAGCauaCCG-GGGUGuga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 87956 | 0.68 | 0.766623 |
Target: 5'- -aGGAGGCCccgCGgcaggaGGCCCCACGg- -3' miRNA: 3'- caCUUCCGGa--GCaua---CCGGGGUGUga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 48461 | 0.68 | 0.766623 |
Target: 5'- cGUGggGGCCggGg--GGCCCUGC-CUg -3' miRNA: 3'- -CACuuCCGGagCauaCCGGGGUGuGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 5079 | 0.68 | 0.794311 |
Target: 5'- cGUGAAGGCCgccaGgaggcuuucAUGGCCCCugGu- -3' miRNA: 3'- -CACUUCCGGag--Ca--------UACCGGGGugUga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 53556 | 0.68 | 0.794311 |
Target: 5'- --uGGGGCCUCGgcUGGCUCC-CAgUa -3' miRNA: 3'- cacUUCCGGAGCauACCGGGGuGUgA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 164908 | 0.68 | 0.803261 |
Target: 5'- cUGuuGGCCUCcuGUGUGGCCgccggCCAgGCUg -3' miRNA: 3'- cACuuCCGGAG--CAUACCGG-----GGUgUGA- -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 51566 | 0.68 | 0.812057 |
Target: 5'- -gGucGGCCaUCGUGaGGCCCCGgcCGCg -3' miRNA: 3'- caCuuCCGG-AGCAUaCCGGGGU--GUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 124764 | 0.67 | 0.837438 |
Target: 5'- cGUGggGGCUgucaagacCGUGgccucGGCCCUACAg- -3' miRNA: 3'- -CACuuCCGGa-------GCAUa----CCGGGGUGUga -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 8491 | 0.67 | 0.837438 |
Target: 5'- aGUGggGGCacgCGUcaGcCCCCACACg -3' miRNA: 3'- -CACuuCCGga-GCAuaCcGGGGUGUGa -5' |
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33324 | 3' | -56.7 | NC_007605.1 | + | 86574 | 0.67 | 0.845538 |
Target: 5'- -cGuGGGCCUUagAUGGCCCC-CAUg -3' miRNA: 3'- caCuUCCGGAGcaUACCGGGGuGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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