miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33324 3' -56.7 NC_007605.1 + 5079 0.68 0.794311
Target:  5'- cGUGAAGGCCgccaGgaggcuuucAUGGCCCCugGu- -3'
miRNA:   3'- -CACUUCCGGag--Ca--------UACCGGGGugUga -5'
33324 3' -56.7 NC_007605.1 + 8491 0.67 0.837438
Target:  5'- aGUGggGGCacgCGUcaGcCCCCACACg -3'
miRNA:   3'- -CACuuCCGga-GCAuaCcGGGGUGUGa -5'
33324 3' -56.7 NC_007605.1 + 21932 0.66 0.878089
Target:  5'- -aGAcccGGGUCUCGgccagccgagcgaccGGCCCCGCGCc -3'
miRNA:   3'- caCU---UCCGGAGCaua------------CCGGGGUGUGa -5'
33324 3' -56.7 NC_007605.1 + 36821 0.66 0.875944
Target:  5'- uUGuGGGCCUUGUGgcaaaauaaGGCCCCGguCACc -3'
miRNA:   3'- cACuUCCGGAGCAUa--------CCGGGGU--GUGa -5'
33324 3' -56.7 NC_007605.1 + 48461 0.68 0.766623
Target:  5'- cGUGggGGCCggGg--GGCCCUGC-CUg -3'
miRNA:   3'- -CACuuCCGGagCauaCCGGGGUGuGA- -5'
33324 3' -56.7 NC_007605.1 + 51566 0.68 0.812057
Target:  5'- -gGucGGCCaUCGUGaGGCCCCGgcCGCg -3'
miRNA:   3'- caCuuCCGG-AGCAUaCCGGGGU--GUGa -5'
33324 3' -56.7 NC_007605.1 + 53424 0.69 0.728083
Target:  5'- cUGGcgcGGGUCg-GUGUGGCCCCugGCc -3'
miRNA:   3'- cACU---UCCGGagCAUACCGGGGugUGa -5'
33324 3' -56.7 NC_007605.1 + 53556 0.68 0.794311
Target:  5'- --uGGGGCCUCGgcUGGCUCC-CAgUa -3'
miRNA:   3'- cacUUCCGGAGCauACCGGGGuGUgA- -5'
33324 3' -56.7 NC_007605.1 + 53583 0.66 0.875944
Target:  5'- gGUGGAGGCUgccaggGGCCUgGCGCUn -3'
miRNA:   3'- -CACUUCCGGagcauaCCGGGgUGUGA- -5'
33324 3' -56.7 NC_007605.1 + 55950 0.66 0.896497
Target:  5'- gGUGu-GGCCUC----GGCCCCAgGCg -3'
miRNA:   3'- -CACuuCCGGAGcauaCCGGGGUgUGa -5'
33324 3' -56.7 NC_007605.1 + 56238 0.66 0.88987
Target:  5'- --uGAGGCggCGggaggGGCCCCAUACUc -3'
miRNA:   3'- cacUUCCGgaGCaua--CCGGGGUGUGA- -5'
33324 3' -56.7 NC_007605.1 + 59582 0.71 0.596651
Target:  5'- gGUGAcAGGUCcCGgcUGGCCCgGCGCUu -3'
miRNA:   3'- -CACU-UCCGGaGCauACCGGGgUGUGA- -5'
33324 3' -56.7 NC_007605.1 + 62242 0.69 0.747554
Target:  5'- cGUGguGGCCUCGcu--GCCCCugGCc -3'
miRNA:   3'- -CACuuCCGGAGCauacCGGGGugUGa -5'
33324 3' -56.7 NC_007605.1 + 67096 0.66 0.883017
Target:  5'- uUGcAGGGCCUCGUcggccaugAUGGCCUC-UGCg -3'
miRNA:   3'- cAC-UUCCGGAGCA--------UACCGGGGuGUGa -5'
33324 3' -56.7 NC_007605.1 + 67668 0.66 0.895845
Target:  5'- aUGGAGGCCccCGgcUGGCCgCCguggccaacgcagGCACg -3'
miRNA:   3'- cACUUCCGGa-GCauACCGG-GG-------------UGUGa -5'
33324 3' -56.7 NC_007605.1 + 68382 1.07 0.003432
Target:  5'- aGUGAAGGCCUCGUAUGGCCCCACACUc -3'
miRNA:   3'- -CACUUCCGGAGCAUACCGGGGUGUGA- -5'
33324 3' -56.7 NC_007605.1 + 84582 0.72 0.566318
Target:  5'- uGUGggGGCCUgGgauucaggcGUGGCUCUugGCUg -3'
miRNA:   3'- -CACuuCCGGAgCa--------UACCGGGGugUGA- -5'
33324 3' -56.7 NC_007605.1 + 85201 0.69 0.757144
Target:  5'- --aGAGGCCUCGgggGGCgCCCACu-- -3'
miRNA:   3'- cacUUCCGGAGCauaCCG-GGGUGuga -5'
33324 3' -56.7 NC_007605.1 + 85261 0.69 0.757144
Target:  5'- --aGAGGCCUCGgggGGCgCCCACu-- -3'
miRNA:   3'- cacUUCCGGAGCauaCCG-GGGUGuga -5'
33324 3' -56.7 NC_007605.1 + 86574 0.67 0.845538
Target:  5'- -cGuGGGCCUUagAUGGCCCC-CAUg -3'
miRNA:   3'- caCuUCCGGAGcaUACCGGGGuGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.