miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33324 5' -57.8 NC_007605.1 + 3726 0.69 0.707737
Target:  5'- -aGGUCUGGaccaggcccGGUGGGGCu--CCUCCCu -3'
miRNA:   3'- caUCAGAUC---------CCACUCCGuccGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 4054 0.71 0.557435
Target:  5'- cGUGGcCUGGGcGUGAagcugaccuuuGGCucGGCCUCCUg -3'
miRNA:   3'- -CAUCaGAUCC-CACU-----------CCGu-CCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 7019 0.68 0.737002
Target:  5'- -aAGUCccGGGG-GAGGagaagagAGGCUUCCCg -3'
miRNA:   3'- caUCAGa-UCCCaCUCCg------UCCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 12338 0.67 0.774739
Target:  5'- -aGGUaCUGGGuGcaggGGGGCAGGCggCCCu -3'
miRNA:   3'- caUCA-GAUCC-Ca---CUCCGUCCGgaGGG- -5'
33324 5' -57.8 NC_007605.1 + 12406 0.67 0.810496
Target:  5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3'
miRNA:   3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5'
33324 5' -57.8 NC_007605.1 + 12464 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 12513 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 13809 0.74 0.434849
Target:  5'- -gGGUCcccgAGGGUGAGGCccAGcccCCUCCCg -3'
miRNA:   3'- caUCAGa---UCCCACUCCG--UCc--GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 14024 0.66 0.859271
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 15226 0.68 0.736038
Target:  5'- uGUGGuUCUaaaAGGGUaacaggaGAGGCAGGgCCUgaagCCCg -3'
miRNA:   3'- -CAUC-AGA---UCCCA-------CUCCGUCC-GGA----GGG- -5'
33324 5' -57.8 NC_007605.1 + 15407 0.67 0.774739
Target:  5'- -aGGUaCUGGGuGcaggGGGGCAGGCggCCCu -3'
miRNA:   3'- caUCA-GAUCC-Ca---CUCCGUCCGgaGGG- -5'
33324 5' -57.8 NC_007605.1 + 15475 0.67 0.810496
Target:  5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3'
miRNA:   3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5'
33324 5' -57.8 NC_007605.1 + 15533 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 15582 0.67 0.818213
Target:  5'- gGUGGccCUGGGGUaagucuggGAGGCAgagggucGGCCUaggCCCg -3'
miRNA:   3'- -CAUCa-GAUCCCA--------CUCCGU-------CCGGA---GGG- -5'
33324 5' -57.8 NC_007605.1 + 16878 0.74 0.434849
Target:  5'- -gGGUCcccgAGGGUGAGGCccAGcccCCUCCCg -3'
miRNA:   3'- caUCAGa---UCCCACUCCG--UCc--GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 17093 0.66 0.859271
Target:  5'- aGUGGaC-AGGGgcgggagGGGGCuGGGCCUCaCCc -3'
miRNA:   3'- -CAUCaGaUCCCa------CUCCG-UCCGGAG-GG- -5'
33324 5' -57.8 NC_007605.1 + 18295 0.68 0.736038
Target:  5'- uGUGGuUCUaaaAGGGUaacaggaGAGGCAGGgCCUgaagCCCg -3'
miRNA:   3'- -CAUC-AGA---UCCCA-------CUCCGUCC-GGA----GGG- -5'
33324 5' -57.8 NC_007605.1 + 18476 0.67 0.774739
Target:  5'- -aGGUaCUGGGuGcaggGGGGCAGGCggCCCu -3'
miRNA:   3'- caUCA-GAUCC-Ca---CUCCGUCCGgaGGG- -5'
33324 5' -57.8 NC_007605.1 + 18544 0.67 0.810496
Target:  5'- -gGGUCUucAGGGaUGGGGCuuGGCCgggUCUa -3'
miRNA:   3'- caUCAGA--UCCC-ACUCCGu-CCGGa--GGG- -5'
33324 5' -57.8 NC_007605.1 + 18602 0.66 0.830776
Target:  5'- -aGGUCUGGGGUGGcGaGCcugcugucucaggagGGGCCUggcUCCg -3'
miRNA:   3'- caUCAGAUCCCACU-C-CG---------------UCCGGA---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.