miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33324 5' -57.8 NC_007605.1 + 107508 0.67 0.810496
Target:  5'- ---uUCUgacGGaGGUGuGGCuGGCCUCCUu -3'
miRNA:   3'- caucAGA---UC-CCACuCCGuCCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 98844 0.7 0.637669
Target:  5'- ---cUCUGGGGUcu--CAGGCCUCCCa -3'
miRNA:   3'- caucAGAUCCCAcuccGUCCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 161217 0.7 0.65783
Target:  5'- -cGGUCaacccUAGGGUGGGGguGGCaaagacaaacuuCUUCCg -3'
miRNA:   3'- caUCAG-----AUCCCACUCCguCCG------------GAGGG- -5'
33324 5' -57.8 NC_007605.1 + 155963 0.69 0.667884
Target:  5'- -gAGUCUugguagaagcacAGGG-GGGGCugAGGCC-CCCg -3'
miRNA:   3'- caUCAGA------------UCCCaCUCCG--UCCGGaGGG- -5'
33324 5' -57.8 NC_007605.1 + 3726 0.69 0.707737
Target:  5'- -aGGUCUGGaccaggcccGGUGGGGCu--CCUCCCu -3'
miRNA:   3'- caUCAGAUC---------CCACUCCGuccGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 7019 0.68 0.737002
Target:  5'- -aAGUCccGGGG-GAGGagaagagAGGCUUCCCg -3'
miRNA:   3'- caUCAGa-UCCCaCUCCg------UCCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 40235 0.67 0.774739
Target:  5'- -aGGcCUAGGGguccagGGGGCAG-CCgcggCCCa -3'
miRNA:   3'- caUCaGAUCCCa-----CUCCGUCcGGa---GGG- -5'
33324 5' -57.8 NC_007605.1 + 112437 0.67 0.774739
Target:  5'- ------cGGGcGUGuccuGGCAGGCCUCCa -3'
miRNA:   3'- caucagaUCC-CACu---CCGUCCGGAGGg -5'
33324 5' -57.8 NC_007605.1 + 85619 0.67 0.801772
Target:  5'- -aAGgagGGGaGUGGGGCcuauGCCUCCCa -3'
miRNA:   3'- caUCagaUCC-CACUCCGuc--CGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 4054 0.71 0.557435
Target:  5'- cGUGGcCUGGGcGUGAagcugaccuuuGGCucGGCCUCCUg -3'
miRNA:   3'- -CAUCaGAUCC-CACU-----------CCGu-CCGGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 35291 0.71 0.547565
Target:  5'- -gGGUCcccgAGGGUGAGGCccaGCC-CCCu -3'
miRNA:   3'- caUCAGa---UCCCACUCCGuc-CGGaGGG- -5'
33324 5' -57.8 NC_007605.1 + 48970 0.72 0.518312
Target:  5'- gGUGGUCcugcggGGGGUGAcGGuCAGGCagCUCCUg -3'
miRNA:   3'- -CAUCAGa-----UCCCACU-CC-GUCCG--GAGGG- -5'
33324 5' -57.8 NC_007605.1 + 13809 0.74 0.434849
Target:  5'- -gGGUCcccgAGGGUGAGGCccAGcccCCUCCCg -3'
miRNA:   3'- caUCAGa---UCCCACUCCG--UCc--GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 16878 0.74 0.434849
Target:  5'- -gGGUCcccgAGGGUGAGGCccAGcccCCUCCCg -3'
miRNA:   3'- caUCAGa---UCCCACUCCG--UCc--GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 23015 0.74 0.434849
Target:  5'- -gGGUCcccgAGGGUGAGGCccAGcccCCUCCCg -3'
miRNA:   3'- caUCAGa---UCCCACUCCG--UCc--GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 26084 0.74 0.434849
Target:  5'- -gGGUCcccgAGGGUGAGGCccAGcccCCUCCCg -3'
miRNA:   3'- caUCAGa---UCCCACUCCG--UCc--GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 29153 0.74 0.434849
Target:  5'- -gGGUCcccgAGGGUGAGGCccAGcccCCUCCCg -3'
miRNA:   3'- caUCAGa---UCCCACUCCG--UCc--GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 32222 0.74 0.434849
Target:  5'- -gGGUCcccgAGGGUGAGGCccAGcccCCUCCCg -3'
miRNA:   3'- caUCAGa---UCCCACUCCG--UCc--GGAGGG- -5'
33324 5' -57.8 NC_007605.1 + 47658 0.73 0.493472
Target:  5'- uGUGGUUUGGGGcaggcccccagcuucUGAGGCGgcuguGGCCUCUa -3'
miRNA:   3'- -CAUCAGAUCCC---------------ACUCCGU-----CCGGAGGg -5'
33324 5' -57.8 NC_007605.1 + 161476 0.72 0.508696
Target:  5'- cGUGGUCgcaguaAGGGagGAGGU-GGCCUCCg -3'
miRNA:   3'- -CAUCAGa-----UCCCa-CUCCGuCCGGAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.