miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33327 3' -61.3 NC_007605.1 + 55528 0.66 0.717428
Target:  5'- gCuGGAGCcAGcGCGCCUAGuGGCCUUg -3'
miRNA:   3'- gGcCCUCGuUCuCGCGGGUC-UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 60753 0.66 0.736223
Target:  5'- gUGGGA-CGAcAGCcCCCAgGGGCCCCc -3'
miRNA:   3'- gGCCCUcGUUcUCGcGGGU-CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 1631 0.66 0.726863
Target:  5'- aCUGGaaAGUgAGGAGCGCCCAccGaCCCCa -3'
miRNA:   3'- -GGCCc-UCG-UUCUCGCGGGUcuC-GGGG- -5'
33327 3' -61.3 NC_007605.1 + 111449 0.66 0.711735
Target:  5'- uCCGuGAGCAGGAGCuugaGgCCAGAgacgagcugcgacagGCCCUc -3'
miRNA:   3'- -GGCcCUCGUUCUCG----CgGGUCU---------------CGGGG- -5'
33327 3' -61.3 NC_007605.1 + 22445 0.66 0.72404
Target:  5'- cCCGGGgaaggGGCGaggaaccggccucuGGGGcCGCCCgggcugccGGGGUCCCu -3'
miRNA:   3'- -GGCCC-----UCGU--------------UCUC-GCGGG--------UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 25514 0.66 0.72404
Target:  5'- cCCGGGgaaggGGCGaggaaccggccucuGGGGcCGCCCgggcugccGGGGUCCCu -3'
miRNA:   3'- -GGCCC-----UCGU--------------UCUC-GCGGG--------UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 171162 0.66 0.745501
Target:  5'- gCGGGcGGCGGGgggucGGgGUCCGcGGGCUCCg -3'
miRNA:   3'- gGCCC-UCGUUC-----UCgCGGGU-CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 71375 0.66 0.730616
Target:  5'- cCCGGGGGCAGGugucGGCGCUugccauaacuuucauCGGuGCagCCa -3'
miRNA:   3'- -GGCCCUCGUUC----UCGCGG---------------GUCuCGg-GG- -5'
33327 3' -61.3 NC_007605.1 + 114163 0.66 0.707927
Target:  5'- aCUGGGA-CGGGguGGUGCCUgguaugcagaaGGGGCCCUg -3'
miRNA:   3'- -GGCCCUcGUUC--UCGCGGG-----------UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 71411 0.66 0.707927
Target:  5'- -aGGcGAgGCAAGAaCGCagCCAGAgGCCCCu -3'
miRNA:   3'- ggCC-CU-CGUUCUcGCG--GGUCU-CGGGG- -5'
33327 3' -61.3 NC_007605.1 + 148980 0.66 0.717428
Target:  5'- aUCGGGAuccGCAGGGGCGCCgAaAGCa-- -3'
miRNA:   3'- -GGCCCU---CGUUCUCGCGGgUcUCGggg -5'
33327 3' -61.3 NC_007605.1 + 140933 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 16307 0.66 0.72404
Target:  5'- cCCGGGgaaggGGCGaggaaccggccucuGGGGcCGCCCgggcugccGGGGUCCCu -3'
miRNA:   3'- -GGCCC-----UCGU--------------UCUC-GCGGG--------UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 67527 0.66 0.707927
Target:  5'- uUGGGGGguGGuGUGCCauacaagGGAGCCUg -3'
miRNA:   3'- gGCCCUCguUCuCGCGGg------UCUCGGGg -5'
33327 3' -61.3 NC_007605.1 + 112270 0.66 0.726863
Target:  5'- aCGGGGGUu-GAGgGgCaAGAGCUCCa -3'
miRNA:   3'- gGCCCUCGuuCUCgCgGgUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 50554 0.66 0.717428
Target:  5'- cUCGGGGGCA-----GCCCAccgcGGCCCCg -3'
miRNA:   3'- -GGCCCUCGUucucgCGGGUc---UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 151041 0.66 0.736223
Target:  5'- gCCaGGGAgagcgauguggGCGAGGauGgGCUCAGgcGGCCCCa -3'
miRNA:   3'- -GG-CCCU-----------CGUUCU--CgCGGGUC--UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 33724 0.66 0.725922
Target:  5'- -gGGGAGCAgcAGGGUugcugaggccgggGUCCAGGGggaCCCg -3'
miRNA:   3'- ggCCCUCGU--UCUCG-------------CGGGUCUCg--GGG- -5'
33327 3' -61.3 NC_007605.1 + 2020 0.66 0.707927
Target:  5'- -aGGGugaacacuugGGCAcggAGAGUGCCCuGGAGgCCUCa -3'
miRNA:   3'- ggCCC----------UCGU---UCUCGCGGG-UCUC-GGGG- -5'
33327 3' -61.3 NC_007605.1 + 30108 0.66 0.697409
Target:  5'- aCgGGGGGCccGGGCcggguugGUCCAGGGCCUUc -3'
miRNA:   3'- -GgCCCUCGuuCUCG-------CGGGUCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.