miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33327 3' -61.3 NC_007605.1 + 144399 0.66 0.717428
Target:  5'- gUGGuGGC-AGAGCuugGCCCuGGGCCCa -3'
miRNA:   3'- gGCCcUCGuUCUCG---CGGGuCUCGGGg -5'
33327 3' -61.3 NC_007605.1 + 2020 0.66 0.707927
Target:  5'- -aGGGugaacacuugGGCAcggAGAGUGCCCuGGAGgCCUCa -3'
miRNA:   3'- ggCCC----------UCGU---UCUCGCGGG-UCUC-GGGG- -5'
33327 3' -61.3 NC_007605.1 + 51990 0.66 0.717428
Target:  5'- --cGGAGaCGGGgauGGUGUcaCCGGAGCCCCu -3'
miRNA:   3'- ggcCCUC-GUUC---UCGCG--GGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 134799 0.66 0.745501
Target:  5'- -gGGGAGUAAGGcCGUgCCAG-GCCgCCa -3'
miRNA:   3'- ggCCCUCGUUCUcGCG-GGUCuCGG-GG- -5'
33327 3' -61.3 NC_007605.1 + 136873 0.66 0.72121
Target:  5'- gCCGGGAGacgcuguccuacggcCAcaccGGAGUcggauacuGCCCccagcAGGGCCCCu -3'
miRNA:   3'- -GGCCCUC---------------GU----UCUCG--------CGGG-----UCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 54822 0.66 0.698368
Target:  5'- gUGGGAGCGGGcucugGGCGugccCCCAGcGCCUUc -3'
miRNA:   3'- gGCCCUCGUUC-----UCGC----GGGUCuCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 133959 0.66 0.745501
Target:  5'- gUGGGAGCGGGAcuacUGCCCAcgacGGCCgCg -3'
miRNA:   3'- gGCCCUCGUUCUc---GCGGGUc---UCGGgG- -5'
33327 3' -61.3 NC_007605.1 + 170625 0.66 0.745501
Target:  5'- gCGGGcGGCGGGgggucGGgGUCCGcGGGCUCCg -3'
miRNA:   3'- gGCCC-UCGUUC-----UCgCGGGU-CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 149647 0.66 0.72121
Target:  5'- uCUGGGuGCAGGAGCGUgUCAGcugaaugucgcucuGCCCg -3'
miRNA:   3'- -GGCCCuCGUUCUCGCG-GGUCu-------------CGGGg -5'
33327 3' -61.3 NC_007605.1 + 73557 0.66 0.73529
Target:  5'- cCCGGGugaAGUAGGuGCGCaugugcuCCGcaaAGCCCCu -3'
miRNA:   3'- -GGCCC---UCGUUCuCGCG-------GGUc--UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 140933 0.66 0.745501
Target:  5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3'
miRNA:   3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 169565 0.66 0.745501
Target:  5'- gCGGGcGGCGGGgggucGGgGUCCGcGGGCUCCg -3'
miRNA:   3'- gGCCC-UCGUUC-----UCgCGGGU-CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 60753 0.66 0.736223
Target:  5'- gUGGGA-CGAcAGCcCCCAgGGGCCCCc -3'
miRNA:   3'- gGCCCUcGUUcUCGcGGGU-CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 60092 0.66 0.717428
Target:  5'- aCCGGuaGGCGAcgcuGCGCCUgAGGGCgCCCg -3'
miRNA:   3'- -GGCCc-UCGUUcu--CGCGGG-UCUCG-GGG- -5'
33327 3' -61.3 NC_007605.1 + 71375 0.66 0.730616
Target:  5'- cCCGGGGGCAGGugucGGCGCUugccauaacuuucauCGGuGCagCCa -3'
miRNA:   3'- -GGCCCUCGUUC----UCGCGG---------------GUCuCGg-GG- -5'
33327 3' -61.3 NC_007605.1 + 7023 0.66 0.698368
Target:  5'- cCCGGGGGaggagaaGAGAGgcuuccCGCCUAGAGCa-- -3'
miRNA:   3'- -GGCCCUCg------UUCUC------GCGGGUCUCGggg -5'
33327 3' -61.3 NC_007605.1 + 170102 0.66 0.745501
Target:  5'- gCGGGcGGCGGGgggucGGgGUCCGcGGGCUCCg -3'
miRNA:   3'- gGCCC-UCGUUC-----UCgCGGGU-CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 111953 0.66 0.726863
Target:  5'- gUGGGuAGCAgaauAGGGC-CCCuuuuGCCCCg -3'
miRNA:   3'- gGCCC-UCGU----UCUCGcGGGucu-CGGGG- -5'
33327 3' -61.3 NC_007605.1 + 1631 0.66 0.726863
Target:  5'- aCUGGaaAGUgAGGAGCGCCCAccGaCCCCa -3'
miRNA:   3'- -GGCCc-UCG-UUCUCGCGGGUcuC-GGGG- -5'
33327 3' -61.3 NC_007605.1 + 151041 0.66 0.736223
Target:  5'- gCCaGGGAgagcgauguggGCGAGGauGgGCUCAGgcGGCCCCa -3'
miRNA:   3'- -GG-CCCU-----------CGUUCU--CgCGGGUC--UCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.