miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33327 3' -61.3 NC_007605.1 + 1631 0.66 0.726863
Target:  5'- aCUGGaaAGUgAGGAGCGCCCAccGaCCCCa -3'
miRNA:   3'- -GGCCc-UCG-UUCUCGCGGGUcuC-GGGG- -5'
33327 3' -61.3 NC_007605.1 + 2020 0.66 0.707927
Target:  5'- -aGGGugaacacuugGGCAcggAGAGUGCCCuGGAGgCCUCa -3'
miRNA:   3'- ggCCC----------UCGU---UCUCGCGGG-UCUC-GGGG- -5'
33327 3' -61.3 NC_007605.1 + 2815 0.69 0.543503
Target:  5'- -aGGGAG-GAGAGgGCCUAcAGCCCa -3'
miRNA:   3'- ggCCCUCgUUCUCgCGGGUcUCGGGg -5'
33327 3' -61.3 NC_007605.1 + 3034 0.67 0.658731
Target:  5'- cCCGGccccgugcaucucGGGCuacGcGCGCCCcccGGGCCCCa -3'
miRNA:   3'- -GGCC-------------CUCGuu-CuCGCGGGu--CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 3250 0.66 0.736223
Target:  5'- aCUGGG-GCccgGGGGGCGCgCGuAGCCCg -3'
miRNA:   3'- -GGCCCuCG---UUCUCGCGgGUcUCGGGg -5'
33327 3' -61.3 NC_007605.1 + 5794 0.68 0.57895
Target:  5'- -gGGGAGCAccccguGGGGUGCCCAaaggcggggggaauGuGCuCCCa -3'
miRNA:   3'- ggCCCUCGU------UCUCGCGGGU--------------CuCG-GGG- -5'
33327 3' -61.3 NC_007605.1 + 7023 0.66 0.698368
Target:  5'- cCCGGGGGaggagaaGAGAGgcuuccCGCCUAGAGCa-- -3'
miRNA:   3'- -GGCCCUCg------UUCUC------GCGGGUCUCGggg -5'
33327 3' -61.3 NC_007605.1 + 10694 0.67 0.669419
Target:  5'- uCCGGGAGCc-GGGCgGCUCGGcuaaggagggcGGCCUUg -3'
miRNA:   3'- -GGCCCUCGuuCUCG-CGGGUC-----------UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 12241 0.66 0.725922
Target:  5'- -gGGGAGCAgcAGGGUugcugaggccgggGUCCAGGGggaCCCg -3'
miRNA:   3'- ggCCCUCGU--UCUCG-------------CGGGUCUCg--GGG- -5'
33327 3' -61.3 NC_007605.1 + 12334 0.68 0.591531
Target:  5'- aCUGGGuGCAGGGGgGCa-GGcGGCCCUa -3'
miRNA:   3'- -GGCCCuCGUUCUCgCGggUC-UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 12366 0.69 0.534039
Target:  5'- uCCgGGGGGCAgagacaggcAGGGCccCCCGGcagcuGGCCCCg -3'
miRNA:   3'- -GG-CCCUCGU---------UCUCGc-GGGUC-----UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 12530 0.69 0.543503
Target:  5'- uCUGGGAGgcaGAGGGUcgGCCUAG-GCCCg -3'
miRNA:   3'- -GGCCCUCg--UUCUCG--CGGGUCuCGGGg -5'
33327 3' -61.3 NC_007605.1 + 12533 0.72 0.36731
Target:  5'- aCCGGGuGCugggaccucGGGUGCCCGcuggcuccaaccucGGGCCCCu -3'
miRNA:   3'- -GGCCCuCGuu-------CUCGCGGGU--------------CUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 12823 0.69 0.543503
Target:  5'- -gGGGGGCuGAGGGCGaCCGuccGGGCCCg -3'
miRNA:   3'- ggCCCUCG-UUCUCGCgGGU---CUCGGGg -5'
33327 3' -61.3 NC_007605.1 + 12828 0.73 0.354415
Target:  5'- aCCaGGGAcCucGGGCacCCCAGAGCCCCu -3'
miRNA:   3'- -GG-CCCUcGuuCUCGc-GGGUCUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 12929 0.72 0.361961
Target:  5'- -gGGGAGCcacccucGGgGCCCAG-GCCCCa -3'
miRNA:   3'- ggCCCUCGuuc----UCgCGGGUCuCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 12991 0.69 0.543503
Target:  5'- cCCGGGucccaggccAGCcgGAGGGaccccggcaGCCCGGgcGGCCCCa -3'
miRNA:   3'- -GGCCC---------UCG--UUCUCg--------CGGGUC--UCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 13032 0.77 0.197179
Target:  5'- cCCGaGGGGCucuGGGGUGCCCGaGGUCCCu -3'
miRNA:   3'- -GGC-CCUCGu--UCUCGCGGGUcUCGGGG- -5'
33327 3' -61.3 NC_007605.1 + 13067 0.69 0.524635
Target:  5'- -gGGGAGCGgagaccaggAGGGCGCCUGGAGgCg- -3'
miRNA:   3'- ggCCCUCGU---------UCUCGCGGGUCUCgGgg -5'
33327 3' -61.3 NC_007605.1 + 13238 0.66 0.72404
Target:  5'- cCCGGGgaaggGGCGaggaaccggccucuGGGGcCGCCCgggcugccGGGGUCCCu -3'
miRNA:   3'- -GGCCC-----UCGU--------------UCUC-GCGGG--------UCUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.